BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0228300 Os01g0228300|AK061358
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236 286 7e-78
AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255 96 2e-20
AT2G14860.1 | chr2:6387820-6389563 REVERSE LENGTH=253 83 1e-16
AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186 76 1e-14
AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191 75 2e-14
AT4G33905.1 | chr4:16254065-16255592 REVERSE LENGTH=262 74 4e-14
AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362 70 9e-13
AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289 70 1e-12
AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367 61 4e-10
AT2G42770.1 | chr2:17798635-17799927 REVERSE LENGTH=233 60 7e-10
>AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236
Length = 235
Score = 286 bits (732), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 175/232 (75%), Gaps = 11/232 (4%)
Query: 1 MRRLWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPED 60
M +LWRWYQ+CL HPV+TQV+SSG LWG GD+ AQ +TH +A R K+ D
Sbjct: 1 MLKLWRWYQRCLTVHPVKTQVISSGFLWGFGDVTAQYITHSTAKRRLLRLTETNKDADAD 60
Query: 61 --------KDKEFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILR--RYQPKTFKFV 110
+D EFK++WKRV ITS FGF FVGPVGH+WYE LD+FI RY PK+ +FV
Sbjct: 61 AEIKVKWKQDAEFKVNWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFV 120
Query: 111 ASKVAADGLLFGPVDLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIAN 170
A+KVA DGL+FGPVDLL+FF+Y+G A+G++ +VK+ +KRDF+PAL L G WP +QIAN
Sbjct: 121 AAKVAMDGLIFGPVDLLVFFTYMGFATGKNTAEVKEGLKRDFLPALALEGGAWPLLQIAN 180
Query: 171 FRFIPVRYQLLYVNLFCLLDSCFLSWIDQQGDAPWKQWFT-SFQKIEGQKGK 221
FR++PV+YQLLYVN+FCL+DS FLSW++QQ DA WKQWFT SFQ ++ + G+
Sbjct: 181 FRYVPVQYQLLYVNIFCLVDSAFLSWVEQQKDAAWKQWFTSSFQPLKERGGQ 232
>AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255
Length = 254
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 6 RWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEF 65
RWY + L +HP T+ +++ +++ D+ +Q +T +
Sbjct: 80 RWYLRKLESHPFMTKSITTSVIYMAADLTSQMITM---------------------EPTG 118
Query: 66 KIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVD 125
D R +SFG F+GP H W+ YL + + +R TFK K+ +LFGPV
Sbjct: 119 SFDLIRTARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFK----KIMMGQVLFGPVS 174
Query: 126 LLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNL 185
+F+SY G + E++ +KRD +P L G WP F+++PV Q L +
Sbjct: 175 NTVFYSYNAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSS 234
Query: 186 FCLLDSCFLSWIDQQGDA 203
+ + +L+++ Q A
Sbjct: 235 CAYIWTIYLTYMANQTKA 252
>AT2G14860.1 | chr2:6387820-6389563 REVERSE LENGTH=253
Length = 252
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 25/194 (12%)
Query: 7 WYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEFK 66
WY + +HPV T+ V+S +++ D+ +Q + AK E D
Sbjct: 76 WYLGMVKSHPVVTKSVTSSLIYIAADLSSQTI---------------AKTSSESYDL--- 117
Query: 67 IDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDL 126
+ R+G +G +GP HYW+ ++ R ++ TFK K+A ++GP+
Sbjct: 118 VRTARMG---GYGLFVLGPTLHYWFNFMSRLFPKQDLITTFK----KMAMGQTIYGPIMT 170
Query: 127 LLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNLF 186
++FFS G + +KRD +PAL G WP FRF PV Q L N F
Sbjct: 171 VIFFSLNASLQGERGSVILARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQPLVSNSF 230
Query: 187 CLLDSCFLSWIDQQ 200
+ + +++++ +
Sbjct: 231 SYVWTIYMTYMANR 244
>AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186
Length = 185
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 30/201 (14%)
Query: 5 WRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKE 64
WR Y L HP+RT+ +++G+L G D AQ ++
Sbjct: 9 WRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVK---------------------- 46
Query: 65 FKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPV 124
+I ++R+ + +GFA+ GP GH++++ +D + T VA KV + L P
Sbjct: 47 -RIQFRRLLLLMLYGFAYGGPFGHFFHKLMDTIFKGKKGNST---VAKKVLLEQLTSSPW 102
Query: 125 DLLLFFSYVGL-ASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYV 183
+ LF SY GL GR + VK + +D+ + WP V N++++P+++++L+
Sbjct: 103 NNFLFMSYYGLVVEGRPWKLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFS 162
Query: 184 NLFCLLDSCFLSWIDQQGDAP 204
+ + SC+ +++ + +P
Sbjct: 163 S---FVASCWSIFLNLKARSP 180
>AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191
Length = 190
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 8 YQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEFKI 67
Y L HP+RT+ +++G+L G+ D+ +Q ++ KI
Sbjct: 14 YLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQ-----------------------KI 50
Query: 68 DWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLL 127
+RV + F F+GP GH+++ YLD+F + +T VA KV + L P++ L
Sbjct: 51 QLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQT---VAKKVILEQLTLSPLNHL 107
Query: 128 LFFSYVGLASGRSV-EQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNLF 186
LF Y G+ R+ V++ +K+ + + T +P V N++++P+ ++++ +L
Sbjct: 108 LFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLV 167
Query: 187 CLLDSCFLS 195
FL+
Sbjct: 168 AFFWGIFLT 176
>AT4G33905.1 | chr4:16254065-16255592 REVERSE LENGTH=262
Length = 261
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 7 WYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEFK 66
WY + + PV T+ V+S +++ D+ +Q + P D
Sbjct: 85 WYLGMVKSRPVLTKSVTSSLIYIAADLSSQTI------------------PQASVDSYDL 126
Query: 67 IDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDL 126
+ R+G +G +GP HYW+ + +R TFK K+A ++GP
Sbjct: 127 VRTARMG---GYGLLILGPTLHYWFNLMSSLFPKRDLITTFK----KMAMGQTVYGPAMN 179
Query: 127 LLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNLF 186
++FFS G + ++ +KRD +P ++ G WP F+F PV Q L N F
Sbjct: 180 VVFFSLNAALQGENGSEIVARLKRDLLPTMLNGVMYWPLCDFITFKFCPVYLQPLVSNSF 239
Query: 187 CLLDSCFLSWIDQQG 201
L + +++++ +
Sbjct: 240 SYLWTIYITYMASRA 254
>AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362
Length = 361
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 5 WRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKE 64
W Y+Q L T+PV ++ SGI++ LGD AQ G+P
Sbjct: 128 WFAYEQILKTNPVLAKMAISGIVYSLGDWIAQCY-----EGKPL---------------- 166
Query: 65 FKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPV 124
F+ D RV + GF G + HY+Y++ + + + + V +KVA D ++ +
Sbjct: 167 FEFDRTRVLRSGLVGFTLHGSLSHYYYQFCEAL----FPFQEWWVVPAKVAFDQTVWSAI 222
Query: 125 DLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVN 184
++F+ +GL +S + ++K F+P L G +WP + + IPV +LL+V+
Sbjct: 223 WNSIYFTVLGLLRFQSPADIFSEIKTTFLPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVD 282
Query: 185 LFCLL 189
L+
Sbjct: 283 CIELI 287
>AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289
Length = 288
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 27/193 (13%)
Query: 4 LWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDK 63
L WYQ L+ PV T+ V++ +L +GD+ Q +K
Sbjct: 114 LLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTI----------------------NK 151
Query: 64 EFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGP 123
+D KR + G VGP H+WY YL + + ++ D +F P
Sbjct: 152 TSSLDKKRTLTFTFLGLGLVGPTLHFWYLYLSKVV----TASGLSGAVIRLLLDQFVFAP 207
Query: 124 VDLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYV 183
+ + +F S V G+ V +++++ A++ +W Q NFRF+P YQ+L
Sbjct: 208 IFVGVFLSAVVTLEGKP-SNVIPKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLAS 266
Query: 184 NLFCLLDSCFLSW 196
N+ L + LS+
Sbjct: 267 NVVALAWNVILSF 279
>AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367
Length = 366
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 5 WRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKE 64
W Y++ L +PV ++V SG+++ +GD AQ G+P
Sbjct: 170 WIAYEEALKQNPVLAKMVISGVVYSVGDWIAQCYE-----GKPL---------------- 208
Query: 65 FKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPV 124
F+ID R + GF G + H++Y++ + + + + V KVA D ++ +
Sbjct: 209 FEIDRARTLRSGLVGFTLHGSLSHFYYQFCEEL----FPFQDWWVVPVKVAFDQTVWSAI 264
Query: 125 DLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVN 184
++F+ +G S + ++K F+P L G +WP + + +PV +LL+V+
Sbjct: 265 WNSIYFTVLGFLRFESPISIFKELKATFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVD 324
Query: 185 LFCLLDSCFLS 195
L+ LS
Sbjct: 325 CVELIWVTILS 335
>AT2G42770.1 | chr2:17798635-17799927 REVERSE LENGTH=233
Length = 232
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 20 QVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEF-----KIDWKRVGI 74
Q V++G L GD AQ GR + ++ E + E + DW R
Sbjct: 58 QAVTAGALTFTGDTIAQL------SGRWKKRTALKQSSSELDEGELWNIFSEHDWIRALR 111
Query: 75 TSSFGFAFVGPVGHYWYEYLDRFILRRYQPK-TFKFVASKVAADGLLFGPVDLLLFFSYV 133
SS+GF GP + WY++LD + PK T + KV + ++ GP + + F++
Sbjct: 112 MSSYGFLLYGPGSYAWYQFLDHSL-----PKPTATNLVLKVLLNQVILGPSVIAVIFAWN 166
Query: 134 GLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNLFCLLDSCF 193
L G+ + ++ + ++D +P L+ G W V I NF +P++ ++ ++++ + + +
Sbjct: 167 NLWLGK-LSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQARVAFMSMGSVFWNFY 225
Query: 194 LS 195
LS
Sbjct: 226 LS 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,280,634
Number of extensions: 219065
Number of successful extensions: 671
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 10
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)