Os08g0566900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mpv17/PMP22 family protein.
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Os08g0566900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mpv17/PMP22 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.58 | 0.337 | 11 | 0.0765 | 1.13 | -0.942 | -0.215 | 1.11 | 0.337 | 2.79 | 23.2 | 1564 | -- | -- |
| 52.52 | 0.338 | 11 | 0.221 | 1.12 | -1.17 | -0.218 | -- | 0.374 | 2.8 | 22.61 | 1527 | -- | -- |
| 51.74 | 0.335 | 11 | 0.0848 | 1.13 | -0.958 | -- | 1.08 | 0.339 | 2.78 | 23.1 | 1554 | -- | -- |
| 52.67 | 0.338 | 11 | 0.223 | 1.12 | -1.19 | -- | -- | 0.374 | 2.79 | 22.6 | 1497 | -- | -- |
| 118.33 | 0.507 | 11.1 | -0.172 | -- | -0.939 | -- | 1.46 | 0.228 | -- | 27 | 2535 | -- | -- |
| 66.39 | 0.382 | 11 | 0.548 | 1.14 | -- | -0.235 | -- | 0.551 | 2.83 | -- | -- | -- | -- |
| 66.58 | 0.382 | 11 | 0.554 | 1.14 | -- | -- | -- | 0.553 | 2.82 | -- | -- | -- | -- |
| 118.52 | 0.507 | 11 | 0.245 | -- | -1.36 | -- | -- | 0.36 | -- | 23.1 | 1068 | -- | -- |
| 53.78 | 0.342 | 11 | -- | 1.12 | -1.29 | -- | -- | 0.328 | 2.8 | 22.58 | 1496 | -- | -- |
| 141.49 | 0.556 | 10.9 | 0.602 | -- | -- | -- | -- | 0.582 | -- | -- | -- | -- | -- |
| 74.65 | 0.404 | 11 | -- | 1.15 | -- | -- | -- | 0.491 | 2.82 | -- | -- | -- | -- |
| 117.75 | 0.505 | 11 | -- | -- | -1.37 | -- | -- | 0.251 | -- | 26.3 | 1057 | -- | -- |
| 151.05 | 0.574 | 11 | -- | -- | -- | -- | -- | 0.515 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 50.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 50.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 11 | 50.77 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 18 | 50.83 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 29 | 50.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 41 | 50.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 47 | 51.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 56 | 51.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 74 | 51.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 77 | 51.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 87 | 51.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 113 | 51.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 144 | 51.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 237 | 51.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 278 | 51.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 305 | 51.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 330 | 51.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 354 | 51.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 370 | 51.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 371 | 51.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 388 | 51.79 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 425 | 51.84 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 427 | 51.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 429 | 51.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 437 | 51.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 446 | 51.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 447 | 51.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 481 | 51.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 504 | 51.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 537 | 51.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 678 | 52.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 714 | 52.08 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 759 | 52.12 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 777 | 52.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 808 | 52.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 810 | 52.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 835 | 52.18 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 853 | 52.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 858 | 52.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 942 | 52.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 963 | 52.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 991 | 52.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |