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Os12g0508100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.59 (0.0283) R2 : 0.767
β1 : 0.788 (0.104) R2dD : 0.0311 R2D : 0.0172
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.18 (0.0604) R2dE : 0.677 R2E : 0.667
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.543 (0.0606) R2dN8 : 0.0548 R2N8 : 0.0747
σ : 0.53
deviance : 129.53
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.25
memory length : 332
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.6
open length of G : 15.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.43 0.494 9.58 0.919 0.602 -1.94 -0.375 1.46 -0.513 16 17.31 323 12.9 16.2
113.03 0.495 9.58 0.918 0.677 -1.77 -1.89 -- -0.527 14.1 18 343 12.9 16.2
110.43 0.489 9.58 0.926 0.618 -1.94 -- 1.58 -0.511 16 17.3 333 12.7 16.3
123.5 0.518 9.6 0.816 0.54 -2.03 -- -- -0.533 16.5 17.35 335 12.8 16.2
117.98 0.506 9.58 0.973 -- -2.2 -- 1.63 -0.423 -- 17.39 364 13.3 15.9
170.52 0.612 9.58 0.677 2.27 -- -1.35 -- -0.638 12.7 -- -- -- --
178.29 0.625 9.58 0.626 2.28 -- -- -- -0.645 12.7 -- -- -- --
129.53 0.53 9.59 0.788 -- -2.18 -- -- -0.543 -- 17.25 332 13.6 15.8
139.94 0.551 9.62 -- 0.55 -1.98 -- -- -0.621 16.3 17.3 339 12.8 16.2
502.7 1.05 9.62 0.545 -- -- -- -- -0.685 -- -- -- -- --
188.62 0.642 9.6 -- 2.27 -- -- -- -0.715 12.6 -- -- -- --
145.68 0.562 9.61 -- -- -2.17 -- -- -0.634 -- 17.26 352 13.6 15.6
510.54 1.05 9.64 -- -- -- -- -- -0.746 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.17 temperature 15.0 270 > th dose independent rect. 13 16
3 116.31 temperature 10.0 270 > th dose dependent rect. 12 18
4 117.22 radiation 10.0 270 < th dose independent rect. 24 8
7 117.79 temperature 10.0 270 > th dose dependent rect. 11 20
9 118.16 radiation 10.0 270 < th dose dependent rect. 24 14
12 118.31 radiation 20.0 10 < th dose dependent sin 2 NA
13 118.42 atmosphere 1010.0 270 < th dose independent rect. 12 18
15 118.45 radiation 20.0 90 < th dose dependent sin 3 NA
16 118.46 radiation 20.0 90 < th dose independent rect. 1 10
21 118.76 radiation 20.0 270 < th dose dependent rect. 24 8
50 119.90 radiation 40.0 90 < th dose dependent rect. 1 10
70 120.47 atmosphere 995.0 270 > th dose dependent rect. 17 8
81 120.74 temperature 15.0 270 > th dose independent rect. 23 8
83 120.77 radiation 20.0 90 < th dose independent rect. 1 18
89 121.01 radiation 40.0 90 < th dose dependent rect. 1 18
91 121.04 radiation 10.0 270 < th dose dependent sin 6 NA
96 121.21 radiation 40.0 10 < th dose dependent rect. 3 17
98 121.22 radiation 10.0 270 < th dose independent rect. 24 14
111 121.48 temperature 10.0 270 > th dose dependent rect. 23 8
128 121.83 atmosphere 1010.0 270 < th dose independent rect. 23 8
173 122.73 wind 9.0 270 < th dose independent rect. 7 17
182 122.92 humidity 70.0 270 > th dose independent rect. 24 7
209 123.34 precipitation 0.1 270 < th dose independent rect. 7 17
210 123.34 precipitation 0.1 270 < th dose dependent rect. 7 17
231 123.59 temperature 30.0 270 < th dose independent rect. 24 7
232 123.59 humidity 50.0 270 > th dose independent rect. 24 7
234 123.59 atmosphere 995.0 270 > th dose independent rect. 24 7
236 123.59 temperature 10.0 270 > th dose independent rect. 7 17
239 123.62 wind 9.0 270 < th dose independent rect. 24 7
278 124.11 wind 7.0 270 < th dose independent rect. 17 8
283 124.25 radiation 40.0 10 < th dose dependent rect. 12 20
304 124.43 atmosphere 1010.0 270 < th dose independent rect. 11 9
305 124.44 precipitation 0.1 270 < th dose independent rect. 24 7
307 124.44 precipitation 0.1 270 < th dose dependent rect. 24 7
356 124.83 temperature 20.0 270 > th dose independent rect. 11 9
363 124.92 radiation 10.0 10 < th dose independent sin 2 NA
370 124.96 humidity 50.0 90 > th dose dependent rect. 1 8
395 125.18 radiation 20.0 30 < th dose independent rect. 1 21
403 125.23 radiation 1.0 90 > th dose dependent sin 5 NA
411 125.37 radiation 40.0 10 < th dose dependent rect. 1 21
455 125.69 precipitation 0.1 270 < th dose independent rect. 19 16
456 125.69 precipitation 0.1 270 < th dose dependent rect. 19 16
479 125.89 wind 7.0 270 < th dose independent rect. 19 16
482 125.90 wind 1.0 270 > th dose independent rect. 7 17
488 125.94 wind 1.0 270 > th dose independent rect. 24 7
505 126.01 temperature 15.0 10 > th dose dependent rect. 14 17
509 126.03 radiation 10.0 90 > th dose independent rect. 7 7
516 126.05 atmosphere 995.0 10 > th dose dependent rect. 20 7
517 126.09 radiation 30.0 10 < th dose dependent rect. 3 11
524 126.15 radiation 10.0 90 < th dose independent sin 3 NA
564 126.48 radiation 20.0 90 < th dose independent sin 5 NA
565 126.48 radiation 40.0 10 < th dose independent rect. 3 17
573 126.52 humidity 50.0 270 > th dose independent rect. 19 16
585 126.60 temperature 10.0 270 > th dose independent rect. 19 16
586 126.60 atmosphere 995.0 270 > th dose independent rect. 19 16
605 126.68 wind 1.0 270 > th dose independent rect. 18 7
609 126.70 temperature 30.0 270 < th dose dependent rect. 18 7
617 126.73 radiation 1.0 270 < th dose dependent rect. 18 7
640 126.96 radiation 1.0 270 < th dose independent rect. 18 7
660 127.13 radiation 20.0 270 < th dose dependent rect. 17 8
691 127.25 precipitation 0.1 270 < th dose independent rect. 18 7
696 127.25 precipitation 0.1 270 < th dose dependent rect. 18 7
733 127.39 humidity 50.0 270 > th dose independent rect. 17 8
746 127.45 precipitation 0.1 270 < th dose independent rect. 11 8
748 127.45 precipitation 0.1 270 < th dose dependent rect. 11 8
761 127.53 radiation 1.0 10 > th dose dependent sin 4 NA
762 127.54 temperature 10.0 270 > th dose independent rect. 18 7
767 127.54 temperature 10.0 270 > th dose independent rect. 1 17
768 127.54 atmosphere 1015.0 270 < th dose independent rect. 1 17
781 127.59 precipitation 0.1 270 < th dose independent rect. 5 8
785 127.59 precipitation 0.1 270 < th dose dependent rect. 5 8
793 127.66 atmosphere 995.0 270 > th dose independent rect. 18 7
808 127.72 temperature 10.0 270 > th dose independent rect. 5 8
809 127.72 atmosphere 995.0 270 > th dose independent rect. 5 8
810 127.72 atmosphere 1015.0 270 < th dose independent rect. 5 8
813 127.73 radiation 40.0 10 < th dose dependent rect. 2 8
832 127.79 temperature 30.0 270 < th dose independent rect. 18 7
849 127.88 wind 1.0 270 > th dose independent rect. 1 5
853 127.91 atmosphere 995.0 270 > th dose independent rect. 7 17
856 127.95 wind 1.0 270 > th dose independent rect. 11 8
868 127.98 wind 9.0 270 < th dose independent rect. 5 8
875 128.04 atmosphere 995.0 270 > th dose independent rect. 1 16
879 128.08 radiation 10.0 10 < th dose independent rect. 3 11
913 128.21 radiation 1.0 90 > th dose dependent rect. 7 7
917 128.24 temperature 30.0 270 < th dose dependent rect. 6 19
956 128.49 atmosphere 995.0 270 > th dose independent rect. 11 8
967 128.52 humidity 60.0 90 > th dose dependent rect. 1 10
989 128.63 humidity 50.0 270 > th dose independent rect. 7 17