BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0508100 Os12g0508100|Os12g0508100
(240 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255 215 2e-56
AT4G33905.1 | chr4:16254065-16255592 REVERSE LENGTH=262 208 2e-54
AT2G14860.1 | chr2:6387820-6389563 REVERSE LENGTH=253 202 1e-52
AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289 81 4e-16
AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367 77 1e-14
AT2G42770.1 | chr2:17798635-17799927 REVERSE LENGTH=233 71 5e-13
AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362 67 1e-11
AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191 56 1e-08
AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236 54 9e-08
AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186 51 5e-07
>AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255
Length = 254
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 125/150 (83%)
Query: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSL 149
WYL +E+ P +TKS+T + I+ ADL+SQMIT+ P S DL+RT RMAS+GL+ GPS
Sbjct: 81 WYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFLGPSQ 140
Query: 150 HIWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRD 209
H+WF+++SK+LPK+DV+ TFKK+ +GQ ++GP+ N+VF+SYNA LQGE EI+ARLKRD
Sbjct: 141 HLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAALQGENSEEIVARLKRD 200
Query: 210 LIPTIKSGLIYWPLCDFITFKFIPVHLQGL 239
L+PT+K+GL+YWP+CDF+TFK++PVHLQ L
Sbjct: 201 LLPTLKNGLMYWPVCDFVTFKYVPVHLQPL 230
>AT4G33905.1 | chr4:16254065-16255592 REVERSE LENGTH=262
Length = 261
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 118/150 (78%)
Query: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSL 149
WYLG +++RPVLTKSVT++ I+ ADLSSQ I DS DLVRT RM YGLLI GP+L
Sbjct: 85 WYLGMVKSRPVLTKSVTSSLIYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLILGPTL 144
Query: 150 HIWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRD 209
H WFN +S L PK+D++ TFKKM +GQ VYGP +N VFFS NA LQGE EI+ARLKRD
Sbjct: 145 HYWFNLMSSLFPKRDLITTFKKMAMGQTVYGPAMNVVFFSLNAALQGENGSEIVARLKRD 204
Query: 210 LIPTIKSGLIYWPLCDFITFKFIPVHLQGL 239
L+PT+ +G++YWPLCDFITFKF PV+LQ L
Sbjct: 205 LLPTMLNGVMYWPLCDFITFKFCPVYLQPL 234
>AT2G14860.1 | chr2:6387820-6389563 REVERSE LENGTH=253
Length = 252
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 116/150 (77%)
Query: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSL 149
WYLG +++ PV+TKSVT++ I+ ADLSSQ I +S DLVRT RM YGL + GP+L
Sbjct: 76 WYLGMVKSHPVVTKSVTSSLIYIAADLSSQTIAKTSSESYDLVRTARMGGYGLFVLGPTL 135
Query: 150 HIWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRD 209
H WFNF+S+L PKQD++ TFKKM +GQ +YGPI+ +FFS NA LQGE I+ARLKRD
Sbjct: 136 HYWFNFMSRLFPKQDLITTFKKMAMGQTIYGPIMTVIFFSLNASLQGERGSVILARLKRD 195
Query: 210 LIPTIKSGLIYWPLCDFITFKFIPVHLQGL 239
L+P + +G++YWPLCDFITF+F PVHLQ L
Sbjct: 196 LLPALFNGVMYWPLCDFITFRFFPVHLQPL 225
>AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289
Length = 288
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSL 149
WY + PVLTK+VTAA + V DL Q+ T+ SLD RTL GL + GP+L
Sbjct: 117 WYQALLSNSPVLTKAVTAALLNLVGDLICQL-TINKTSSLDKKRTLTFTFLGLGLVGPTL 175
Query: 150 HIWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRD 209
H W+ ++SK++ + ++ L Q V+ PI VF S L+G+ ++ +L+++
Sbjct: 176 HFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKP-SNVIPKLQQE 234
Query: 210 LIPTIKSGLIYWPLCDFITFKFIPVHLQGL 239
+ + W F+ F+F+P + Q L
Sbjct: 235 WTGAMIANWQLWIPFQFLNFRFVPQNYQVL 264
>AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367
Length = 366
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%)
Query: 91 YLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSLH 150
Y +++ PVL K V + +++V D +Q P +D RTLR G + G H
Sbjct: 173 YEEALKQNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEIDRARTLRSGLVGFTLHGSLSH 232
Query: 151 IWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRDL 210
++ F +L P QD K+ Q V+ I NS++F+ L+ E+ I LK
Sbjct: 233 FYYQFCEELFPFQDWWVVPVKVAFDQTVWSAIWNSIYFTVLGFLRFESPISIFKELKATF 292
Query: 211 IPTIKSGLIYWPLCDFITFKFIPVH 235
+P + +G WP IT+ +PV
Sbjct: 293 LPMLTAGWKLWPFAHLITYGLVPVE 317
>AT2G42770.1 | chr2:17798635-17799927 REVERSE LENGTH=233
Length = 232
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 130 DLVRTLRMASYGLLISGPSLHIWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFS 189
D +R LRM+SYG L+ GP + W+ F+ LPK N K+ L Q + GP + +V F+
Sbjct: 105 DWIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIFA 164
Query: 190 YNAGLQGETIPEIMARLKRDLIPTIKSGLIYWPLCDFITFKFIPVH 235
+N G+ + E+ + ++D +PT+ G +W + F +P+
Sbjct: 165 WNNLWLGK-LSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQ 209
>AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362
Length = 361
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 91 YLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSLH 150
Y ++ PVL K + ++++ D +Q P D R LR G + G H
Sbjct: 131 YEQILKTNPVLAKMAISGIVYSLGDWIAQCYEGKPLFEFDRTRVLRSGLVGFTLHGSLSH 190
Query: 151 IWFNFVSKLLPKQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRDL 210
++ F L P Q+ K+ Q V+ I NS++F+ L+ ++ +I + +K
Sbjct: 191 YYYQFCEALFPFQEWWVVPAKVAFDQTVWSAIWNSIYFTVLGLLRFQSPADIFSEIKTTF 250
Query: 211 IPTIKSGLIYWPLCDFITFKFIPV 234
+P + +G WPL +T+ IPV
Sbjct: 251 LPMLTAGWKLWPLAHLVTYGVIPV 274
>AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191
Length = 190
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 91 YLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSLH 150
YL ++ P+ TK++TA + V+D+ SQ L + L R L + GP+ H
Sbjct: 14 YLSQLQQHPLRTKAITAGVLSGVSDVVSQ--KLSGIQKIQLRRVLLKVIFAGGFLGPAGH 71
Query: 151 IWFNFVSKLLP-KQDVMNTFKKMFLGQAVYGPIINSVFFSYNAGLQGETIPEIMARLK-R 208
+ ++ K K+D KK+ L Q P +N + F G+ E P + R + +
Sbjct: 72 FFHTYLDKFFKGKKDTQTVAKKVILEQLTLSP-LNHLLFMIYYGVVIERTPWTLVRERIK 130
Query: 209 DLIPTIK-SGLIYWPLCDFITFKFIPVHLQ 237
PT++ + ++P+ +I +K++P+H +
Sbjct: 131 KTYPTVQLTAWTFFPVVGWINYKYVPLHFR 160
>AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236
Length = 235
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 37/184 (20%)
Query: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMIT--------------------------- 122
WY + PV T+ +++ ++ D+++Q IT
Sbjct: 7 WYQRCLTVHPVKTQVISSGFLWGFGDVTAQYITHSTAKRRLLRLTETNKDADADAEIKVK 66
Query: 123 --LGPEDSLDLVRTLRMASYGLLISGPSLHIWFNFVSKLL-------PKQDVMNTFKKMF 173
E ++ R + +G GP H W+ + K + PK K+
Sbjct: 67 WKQDAEFKVNWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVA-AKVA 125
Query: 174 LGQAVYGPIINSVFFSYNAGLQGETIPEIMARLKRDLIPTIKSGLIYWPLCDFITFKFIP 233
+ ++GP+ VFF+Y G+ E+ LKRD +P + WPL F+++P
Sbjct: 126 MDGLIFGPVDLLVFFTYMGFATGKNTAEVKEGLKRDFLPALALEGGAWPLLQIANFRYVP 185
Query: 234 VHLQ 237
V Q
Sbjct: 186 VQYQ 189
>AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186
Length = 185
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 91 YLGSIEARPVLTKSVTAAAIFTVADLSSQMITLGPEDSLDLVRTLRMASYGLLISGPSLH 150
YL ++A P+ TK++TA + +D +Q I+ + R L + YG GP H
Sbjct: 12 YLIQLQAHPLRTKAITAGVLAGCSDAIAQKIS--GVKRIQFRRLLLLMLYGFAYGGPFGH 69
Query: 151 IWFNFVSKLLPKQDVMNTF-KKMFLGQAVYGPIINSVFFSYNA-GLQGETIPEIMARLKR 208
+ + + + +T KK+ L Q P N +F SY ++G + +L +
Sbjct: 70 FFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPWKLVKHKLGK 129
Query: 209 DLIPTIK-SGLIYWPLCDFITFKFIPVHLQGL 239
D PTI+ + +WP+ ++ ++++P+ + L
Sbjct: 130 DY-PTIQLTAWKFWPIVGWVNYQYVPLQFRVL 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,912,701
Number of extensions: 131778
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 10
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)