BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0224400 Os01g0224400|AK064461
(151 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0224400 Mitochondrial substrate carrier family protein 308 9e-85
Os08g0386800 Mitochondrial substrate carrier family protein 209 8e-55
Os02g0665200 Mitochondrial substrate carrier family protein 70 6e-13
Os01g0143100 Mitochondrial substrate carrier family protein 70 8e-13
Os10g0573700 Similar to Mitochondrial carnitine/acylcarniti... 67 7e-12
>Os01g0224400 Mitochondrial substrate carrier family protein
Length = 151
Score = 308 bits (789), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 VGKNTDAVRSYHLLWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGAN 60
VGKNTDAVRSYHLLWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGAN
Sbjct: 1 VGKNTDAVRSYHLLWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGAN 60
Query: 61 FSAGFIAGVISAGATCPLDVAKTRRQIEKDPARVLHMNTRRILHEVWSKEGISGIFRGAG 120
FSAGFIAGVISAGATCPLDVAKTRRQIEKDPARVLHMNTRRILHEVWSKEGISGIFRGAG
Sbjct: 61 FSAGFIAGVISAGATCPLDVAKTRRQIEKDPARVLHMNTRRILHEVWSKEGISGIFRGAG 120
Query: 121 PRMARAGPSVGIVVSSYEVVKHIMHRKHAEL 151
PRMARAGPSVGIVVSSYEVVKHIMHRKHAEL
Sbjct: 121 PRMARAGPSVGIVVSSYEVVKHIMHRKHAEL 151
>Os08g0386800 Mitochondrial substrate carrier family protein
Length = 414
Score = 209 bits (531), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 120/148 (81%)
Query: 1 VGKNTDAVRSYHLLWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGAN 60
+ +T ++Y LWTG+GAQLARDVPFSAICW+ LEP RR L+ IVGE+ +AA +LGAN
Sbjct: 265 LASSTQNAQNYRALWTGVGAQLARDVPFSAICWSTLEPIRRKLLGIVGEEGDAASVLGAN 324
Query: 61 FSAGFIAGVISAGATCPLDVAKTRRQIEKDPARVLHMNTRRILHEVWSKEGISGIFRGAG 120
F+AGF+AG ++AGATCPLDVAKTRRQIEKD + + M TR+ L ++WS G+ G+F G G
Sbjct: 325 FAAGFVAGSLAAGATCPLDVAKTRRQIEKDTQKAMRMTTRQTLADIWSSGGMKGLFTGVG 384
Query: 121 PRMARAGPSVGIVVSSYEVVKHIMHRKH 148
PR+ARAGPSVGIV+S YEVVK+ +H++H
Sbjct: 385 PRVARAGPSVGIVISFYEVVKYALHQRH 412
>Os02g0665200 Mitochondrial substrate carrier family protein
Length = 618
Score = 70.1 bits (170), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 14 LWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGANFSAGFIAGVISAG 73
L+ G GA L R++P S I + E ++ +++ +NA + G G AG +A
Sbjct: 479 LYAGWGAVLCRNIPHSVIKFYTYESLKQFMLK--SAPANANLDSGQTLFCGGFAGSTAAL 536
Query: 74 ATCPLDVAKTRRQIEKDPARVLHMNTRRILHEVWSKEGISGIFRGAGPRMARAGPSVGIV 133
T P DV KTR Q++ + L E++ EG+ G++RG PR+A I
Sbjct: 537 CTTPFDVVKTRVQLQALSPISKYDGVLHALKEIFQHEGLQGLYRGLAPRLAMYISQGAIF 596
Query: 134 VSSYEVVKHIM 144
+SYE +K IM
Sbjct: 597 FTSYEFLKTIM 607
>Os01g0143100 Mitochondrial substrate carrier family protein
Length = 322
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 14 LWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGANFSAGFIAGVISAG 73
L+ GLGA L P AI +TV E R H ++ Q + AV+ + +G ++G+ S+
Sbjct: 185 LYKGLGATLLGVGPSIAISFTVYESLRSHW-QMERPQDSPAVV---SLFSGSLSGIASST 240
Query: 74 ATCPLDVAKTRRQIE--KDPARVLHMNTRRILHEVWSKEGISGIFRGAGPRMARAGPSVG 131
AT PLD+ K R Q++ + V + + +++ KEG+ G +RG P + PSVG
Sbjct: 241 ATFPLDLVKRRMQLQGAAGTSSVCKSSITGTIRQIFQKEGLRGFYRGIVPEYLKVVPSVG 300
Query: 132 IVVSSYEVVKHIM 144
I +YE +K ++
Sbjct: 301 IAFMTYETLKSLL 313
>Os10g0573700 Similar to Mitochondrial carnitine/acylcarnitine carrier-like
protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine
translocase-like protein) (CAC-like protein)
Length = 316
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 14 LWTGLGAQLARDVPFSAICWTVLEPTRRHLIRIVGEQSNAAVILGANFSAGFIAGVISAG 73
L+ GLG LAR+VP +A+ + V E +++L G Q +++ G+ AG +AG G
Sbjct: 189 LFKGLGPTLAREVPGNALMFGVYEAIKQYL---AGGQDTSSLGRGSLVVAGGLAGASFWG 245
Query: 74 ATCPLDVAKTRRQIE--KDPARVLHMNTRRILHEVWSKEGISGIFRGAGPRMARAGPSVG 131
+ P DV K+ Q++ K+P M+ R ++ + +G+ G+++G GP MAR+ P+
Sbjct: 246 SVYPTDVVKSVIQVDDYKNPKYSGSMDAFR---KILAADGVKGLYKGFGPAMARSVPANA 302
Query: 132 IVVSSYEVVKHIM 144
+YEV + +
Sbjct: 303 ACFLAYEVTRSAL 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,289,733
Number of extensions: 208387
Number of successful extensions: 673
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)