BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0183700 Os01g0183700|Os01g0183700
(607 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0183700 Zinc finger, FYVE/PHD-type domain containing p... 794 0.0
Os09g0134500 Similar to Trithorax-like protein 1 112 9e-25
Os01g0218800 Similar to Trithorax 5 (Fragment) 83 7e-16
Os08g0290500 Similar to AF-10 protein 67 3e-11
>Os01g0183700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 607
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/607 (70%), Positives = 428/607 (70%)
Query: 1 MEFAVGSGSVRDLPPSKRFKYVGGSSLGMAPCLPARKRLCPPMLEXXXXXXXXVPVCLPX 60
MEFAVGSGSVRDLPPSKRFKYVGGSSLGMAPCLPARKRLCPPMLE VPVCLP
Sbjct: 1 MEFAVGSGSVRDLPPSKRFKYVGGSSLGMAPCLPARKRLCPPMLEAAAAAAAAVPVCLPA 60
Query: 61 XXXXXXXXXXVEGGGFALCLPAKKRXXXXXXXXXXXXXXXXXKKRIHAXXXXXXXXXXXX 120
VEGGGFALCLPAKKR KKRIHA
Sbjct: 61 KKRAYAAAAAVEGGGFALCLPAKKRAYAPPVDDAVAPACLPAKKRIHAPPPPPPDSGASP 120
Query: 121 XXXTTKRVDTLPPAAADKAAISPSIPVPVRKRVHXXXXXXXXXXXXXXXXXSIPVXXXXX 180
TTKRVDTLPPAAADKAAISPSIPVPVRKRVH SIPV
Sbjct: 121 SVPTTKRVDTLPPAAADKAAISPSIPVPVRKRVHAPQPPPAPAPEKAAVSPSIPVPAKKR 180
Query: 181 XXXXXXXXXXXXXXXXPFKDLVNTLPPPRDAAVXXXXXXXXXXXXXXXXXDTAAPVSVCL 240
PFKDLVNTLPPPRDAAV DTAAPVSVCL
Sbjct: 181 VSATAAAAATDASPRVPFKDLVNTLPPPRDAAVSPSIPAKKSARAPPSPKDTAAPVSVCL 240
Query: 241 PSNKRVMXXXXXXXXXXXKESDGARVAAVKEAKPQGSNKRGATTNSSVANGVEDDYARAE 300
PSNKRVM KESDGARVAAVKEAKPQGSNKRGATTNSSVANGVEDDYARAE
Sbjct: 241 PSNKRVMPPFLPPSPPPSKESDGARVAAVKEAKPQGSNKRGATTNSSVANGVEDDYARAE 300
Query: 301 ASXXXXXXXXXXXXXXXXXXXXQVSKKQRSNTCRESKDQECNQSCSAISAKQSEVEALEK 360
AS QVSKKQRSNTCRESKDQECNQSCSAISAKQSEVEALEK
Sbjct: 301 ASKIQEKPKIPEKPINHEEIKEQVSKKQRSNTCRESKDQECNQSCSAISAKQSEVEALEK 360
Query: 361 ACKAIDLNEAAREEDSWDGERVAREPTQXXXXXXXXXXXXXXDDGVHCAVCGSTDGDPSD 420
ACKAIDLNEAAREEDSWDGERVAREPTQ DDGVHCAVCGSTDGDPSD
Sbjct: 361 ACKAIDLNEAAREEDSWDGERVAREPTQEAMAAAAEEEVEEEDDGVHCAVCGSTDGDPSD 420
Query: 421 PIVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTXXXXXXXXXXXXXXXXXRCCLCPA 480
PIVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCT RCCLCPA
Sbjct: 421 PIVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTAAAAKKSKGNKPPPPPPRCCLCPA 480
Query: 481 RGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVDCSRVPAHRFATACYVCESGGGCA 540
RGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVDCSRVPAHRFATACYVCESGGGCA
Sbjct: 481 RGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVDCSRVPAHRFATACYVCESGGGCA 540
Query: 541 LECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXFCLEHTKLWEKQQLTGKYK 600
LECSQPRCGLGFHVSCGLDAGLCIEYQEAK FCLEHTKLWEKQQLTGKYK
Sbjct: 541 LECSQPRCGLGFHVSCGLDAGLCIEYQEAKAGGGGGGVVAGFCLEHTKLWEKQQLTGKYK 600
Query: 601 IVSRGQK 607
IVSRGQK
Sbjct: 601 IVSRGQK 607
>Os09g0134500 Similar to Trithorax-like protein 1
Length = 1022
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 407 HCAVCGSTDGDPSDPIVFCDGCDLMVHASCYGN--PLASFIPDGDWFCSVCTXXXXXXXX 464
+C+VC + + + CD C +MVHA CYG PL + W C++C
Sbjct: 566 YCSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELEPLNGVL----WLCNLCRPEAPRVSP 621
Query: 465 XXXXXXXXXRCCLCPARGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVD-CSRVPA 523
RCCLCP GGAMK TTD RWAH+ACA+ +PE +D + +D SR+
Sbjct: 622 ---------RCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLKDVKRMEPIDGLSRINK 672
Query: 524 HRFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQE 568
R+ C +C G ++CS P C + +H C A LC+E ++
Sbjct: 673 DRWKLLCSICGVAYGACIQCSHPTCRVAYHPLCARAADLCVELED 717
>Os01g0218800 Similar to Trithorax 5 (Fragment)
Length = 991
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGNPLASFIPD-GDWFCSVCTXXXXXXXXXX 466
CAVC + + I+ C+ C + VH CYG A + D +W C C
Sbjct: 564 CAVCRWVEDWDYNKIIICNRCQIAVHQECYG---ARDVQDFTNWVCRACE---------- 610
Query: 467 XXXXXXXRCCLCPARGGAMKRT-TDARWAHIACALLVPEVFF-RDPDGRDGVDCSRVPAH 524
CCLCP +GGA+K T D W H+ CA P+V F D + +P+
Sbjct: 611 -LPKQKRECCLCPVKGGALKPTDIDQLWVHVTCAWFQPKVSFPVDETMEPAMGILSIPSE 669
Query: 525 RFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXFCL 584
F AC +C+ G +C +C +H C AG +E Q ++ +C
Sbjct: 670 YFKKACVICKQMHGACTQCY--KCSTYYHAMCASRAGYRMELQYSEKNGRNITRMVSYCA 727
Query: 585 EHT 587
H+
Sbjct: 728 FHS 730
>Os08g0290500 Similar to AF-10 protein
Length = 142
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 30/34 (88%)
Query: 485 MKRTTDARWAHIACALLVPEVFFRDPDGRDGVDC 518
MK TT+ARWAHI CALLVPEVFFRDPD DGVDC
Sbjct: 1 MKHTTNARWAHIVCALLVPEVFFRDPDDHDGVDC 34
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,421,189
Number of extensions: 630903
Number of successful extensions: 1452
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 4
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)