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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0183700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0437) R2 : 0.129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.43 (0.542) R2dE : 0.128 R2E : 0.128
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0468 (0.0921) R2dN8 : 0.00064 R2N8 : 0.00124
σ : 0.821
deviance : 310.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.56
memory length : 315
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.13
open length of G : 0.434

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.21 0.824 2.94 0.153 0.054 3.34 0.904 -2.22 -0.0298 15.6 18.7 301 2.03 0.383
307.15 0.816 2.94 0.167 0.0568 4.27 0.972 -- -0.0359 16.2 18.49 302 2.02 0.47
309.24 0.819 2.94 0.18 0.0843 4 -- -1.21 -0.0247 18.3 18.43 335 2.12 0.25
309.24 0.819 2.94 0.194 0.0849 4.56 -- -- -0.0234 18.3 18.43 328 2.13 0.35
309.6 0.82 2.94 0.184 -- 4.05 -- -1.04 -0.0253 -- 18.42 332 2.11 0.276
349.74 0.877 2.96 0.0347 0.0537 -- -1.46 -- -0.0853 4.11 -- -- -- --
355.79 0.883 2.95 0.0511 0.0473 -- -- -- -0.0771 2.49 -- -- -- --
309.6 0.82 2.94 0.191 -- 4.52 -- -- -0.0255 -- 18.38 329 2.11 0.307
310.21 0.82 2.95 -- 0.0807 4.46 -- -- -0.0449 18.4 18.55 316 2.14 0.404
355.92 0.882 2.95 0.0531 -- -- -- -- -0.076 -- -- -- -- --
355.86 0.882 2.95 -- 0.0482 -- -- -- -0.0828 2.51 -- -- -- --
310.54 0.821 2.95 -- -- 4.43 -- -- -0.0468 -- 18.56 315 2.13 0.434
355.99 0.881 2.95 -- -- -- -- -- -0.0819 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.61 wind 3.0 90 > th dose independent rect. 2 1
2 322.14 temperature 20.0 270 < th dose dependent rect. 2 1
3 324.34 wind 3.0 90 > th dose dependent rect. 2 1
4 325.22 humidity 90.0 1440 > th dose independent rect. 16 1
5 325.54 temperature 20.0 30 < th dose independent rect. 3 1
7 325.65 humidity 90.0 1440 > th dose dependent rect. 16 2
10 326.11 temperature 20.0 10 < th dose dependent rect. 3 8
13 326.52 wind 5.0 720 > th dose independent rect. 3 2
15 326.56 temperature 20.0 10 < th dose dependent rect. 4 1
18 326.65 temperature 20.0 10 < th dose dependent rect. 3 3
23 327.01 wind 5.0 720 > th dose dependent rect. 3 1
30 327.41 wind 1.0 10 < th dose independent rect. 13 1
32 327.41 wind 1.0 10 < th dose dependent rect. 13 1
39 327.96 humidity 90.0 1440 > th dose independent rect. 15 3
55 328.90 precipitation 0.1 270 > th dose independent rect. 1 1
56 328.90 precipitation 0.1 270 > th dose dependent rect. 1 1
57 329.12 wind 5.0 90 > th dose independent rect. 2 4
74 329.55 wind 5.0 90 > th dose dependent rect. 2 4
97 330.32 humidity 90.0 1440 > th dose dependent rect. 9 9
104 330.81 wind 5.0 1440 < th dose independent rect. 3 2
111 331.21 precipitation 0.1 1440 > th dose independent rect. 14 2
113 331.21 precipitation 0.1 1440 > th dose dependent rect. 14 2
115 331.27 humidity 90.0 1440 < th dose independent rect. 16 1
116 331.35 temperature 20.0 10 < th dose independent rect. 3 7
121 331.59 wind 5.0 270 > th dose independent rect. 1 7
143 332.03 atmosphere 1000.0 90 < th dose independent rect. 13 1
146 332.07 atmosphere 1000.0 10 < th dose dependent rect. 14 1
151 332.12 atmosphere 1000.0 90 < th dose independent rect. 12 3
192 332.59 wind 3.0 720 > th dose dependent rect. 2 4
201 332.75 wind 5.0 270 > th dose dependent rect. 1 7
202 332.77 precipitation 0.1 1440 > th dose independent rect. 16 2
210 332.93 precipitation 0.1 1440 < th dose independent rect. 14 2
211 332.93 precipitation 0.1 1440 < th dose dependent rect. 14 2
231 333.34 wind 3.0 270 > th dose dependent rect. 24 9
232 333.35 wind 7.0 10 > th dose independent rect. 11 5
246 333.73 wind 5.0 270 > th dose independent rect. 24 9
256 333.77 wind 1.0 10 < th dose dependent rect. 13 5
263 333.79 humidity 90.0 1440 > th dose independent rect. 9 9
267 333.88 atmosphere 1010.0 720 > th dose independent rect. 24 1
279 334.14 radiation 20.0 30 < th dose dependent rect. 11 1
298 334.42 precipitation 0.1 1440 > th dose dependent rect. 16 2
310 334.58 wind 5.0 10 > th dose dependent rect. 11 5
351 335.12 atmosphere 1005.0 90 < th dose independent rect. 2 3
374 335.35 atmosphere 1005.0 10 < th dose independent rect. 3 1
390 335.42 wind 3.0 270 > th dose dependent rect. 23 21
398 335.49 temperature 20.0 10 < th dose dependent rect. 3 16
410 335.56 radiation 40.0 10 > th dose dependent rect. 14 1
455 335.63 wind 5.0 270 > th dose dependent rect. 23 17
462 335.66 wind 7.0 10 > th dose independent rect. 11 2
463 335.66 temperature 15.0 4320 < th dose independent rect. 6 4
516 335.93 wind 5.0 270 > th dose independent rect. 23 14
526 335.98 temperature 15.0 4320 < th dose independent rect. 6 1
543 336.07 radiation 10.0 30 < th dose independent rect. 11 1
549 336.11 wind 5.0 270 > th dose independent rect. 23 17
562 336.17 wind 7.0 10 > th dose dependent rect. 4 12
571 336.18 wind 7.0 90 > th dose independent rect. 10 1
582 336.22 wind 5.0 90 > th dose dependent rect. 10 1
585 336.23 wind 5.0 270 > th dose independent rect. 23 12
602 336.30 wind 5.0 720 > th dose dependent rect. 23 14
630 336.43 wind 7.0 10 > th dose dependent rect. 11 2
636 336.45 precipitation 0.1 1440 < th dose independent rect. 6 12
637 336.45 precipitation 0.1 1440 < th dose dependent rect. 6 12
645 336.47 temperature 20.0 10 < th dose independent rect. 3 16
656 336.53 precipitation 0.1 1440 > th dose independent rect. 6 12
675 336.62 temperature 15.0 4320 < th dose independent rect. 9 2
682 336.63 temperature 15.0 4320 < th dose dependent rect. 9 2
686 336.63 precipitation 0.1 720 > th dose dependent rect. 21 8
690 336.65 precipitation 0.1 1440 > th dose independent rect. 3 15
699 336.67 wind 5.0 720 > th dose dependent rect. 10 1
705 336.69 precipitation 0.1 1440 < th dose independent rect. 3 15
707 336.69 precipitation 0.1 1440 < th dose dependent rect. 3 15
710 336.70 wind 3.0 720 > th dose dependent sin 6 NA
719 336.73 humidity 50.0 14400 < th dose independent rect. 8 1
737 336.73 humidity 50.0 14400 < th dose dependent rect. 8 1
754 336.74 wind 5.0 270 > th dose independent sin 8 NA
767 336.78 wind 3.0 270 > th dose dependent sin 8 NA
771 336.79 atmosphere 1010.0 30 < th dose independent rect. 4 23
793 336.86 wind 5.0 270 > th dose independent rect. 23 21
810 336.92 temperature 20.0 30 < th dose independent rect. 24 5
827 336.97 precipitation 0.1 720 > th dose dependent rect. 21 11
866 337.05 precipitation 0.1 1440 > th dose independent rect. 12 6
877 337.06 wind 5.0 270 > th dose dependent rect. 18 22
878 337.07 wind 9.0 90 > th dose independent rect. 1 10
899 337.08 atmosphere 1000.0 10 < th dose dependent rect. 13 8
914 337.11 temperature 15.0 4320 > th dose independent rect. 9 5
928 337.15 precipitation 0.1 1440 < th dose independent rect. 12 6
932 337.15 precipitation 0.1 1440 < th dose dependent rect. 12 6
943 337.17 radiation 10.0 90 < th dose dependent rect. 7 5
949 337.18 precipitation 0.1 720 > th dose dependent rect. 21 16
950 337.19 temperature 20.0 1440 > th dose independent rect. 11 1
951 337.19 temperature 15.0 4320 > th dose independent rect. 6 8
977 337.24 radiation 10.0 1440 > th dose independent rect. 7 2
992 337.25 humidity 90.0 1440 > th dose dependent rect. 19 1