BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0183700 Os01g0183700|Os01g0183700
(607 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14740.2 | chr3:4952185-4953306 REVERSE LENGTH=344 246 2e-65
AT2G31650.1 | chr2:13455448-13462181 REVERSE LENGTH=1063 102 6e-22
AT1G05830.1 | chr1:1754452-1761225 FORWARD LENGTH=1084 101 1e-21
AT3G61740.1 | chr3:22851133-22856548 REVERSE LENGTH=1019 80 3e-15
AT4G27910.1 | chr4:13894694-13900256 FORWARD LENGTH=1028 78 1e-14
AT5G53430.1 | chr5:21677623-21683166 FORWARD LENGTH=1044 76 5e-14
AT1G77800.1 | chr1:29253800-29260190 FORWARD LENGTH=1376 58 2e-08
>AT3G14740.2 | chr3:4952185-4953306 REVERSE LENGTH=344
Length = 343
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 137/204 (67%), Gaps = 11/204 (5%)
Query: 403 DDGVHCAVCGSTDGDPSDPIVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTXXXXXX 462
+DG+ CAVC STDGDP +PIVFCDGCDLMVHASCYGNPL IP+GDWFC C
Sbjct: 148 EDGIMCAVCQSTDGDPLNPIVFCDGCDLMVHASCYGNPLVKAIPEGDWFCRQCLSSKNRE 207
Query: 463 XXXXXXXXXXXRCCLCPARGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVDCSRVP 522
CCLC +GGAMK T D RWAHI CAL VPEV+F DP+GR+G+ CS V
Sbjct: 208 KIFS--------CCLCTTKGGAMKPTNDGRWAHITCALFVPEVYFEDPEGREGICCSEVL 259
Query: 523 AHRFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXF 582
+ R+ CY+C+ GC +ECS+ RC L FHV+CGL LCIEY+E K F
Sbjct: 260 SKRWKDRCYLCKVRRGCVIECSEMRCKLAFHVTCGLKEDLCIEYREGK---KSGGIVVGF 316
Query: 583 CLEHTKLWEKQQLTGKYKIVSRGQ 606
C EHTKLWE+QQ +GKYKIV+R +
Sbjct: 317 CNEHTKLWERQQESGKYKIVAREE 340
>AT2G31650.1 | chr2:13455448-13462181 REVERSE LENGTH=1063
Length = 1062
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGNPLASFIP-DGD-WFCSVCTXXXXXXXXX 465
C VC + ++ + CD C +MVHA CYG P DG W C++C
Sbjct: 612 CNVCHMDEEYENNLFLQCDKCRMMVHAKCYG----ELEPCDGALWLCNLC---------R 658
Query: 466 XXXXXXXXRCCLCPARGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVD-CSRVPAH 524
RCCLCP GGAMK TTD RWAH+ACA+ +PE D + +D ++V
Sbjct: 659 PGAPDMPPRCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLSDVKKMEPIDGVNKVSKD 718
Query: 525 RFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQ 567
R+ C +C G ++CS C + +H C AGLC+E +
Sbjct: 719 RWKLMCTICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELE 761
>AT1G05830.1 | chr1:1754452-1761225 FORWARD LENGTH=1084
Length = 1083
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGN--PLASFIPDGDWFCSVCTXXXXXXXXX 465
C VC + ++ + CD C +MVH CYG P + W C++C
Sbjct: 629 CNVCHMDEEYENNLFLQCDKCRMMVHTRCYGQLEPHNGIL----WLCNLC---------R 675
Query: 466 XXXXXXXXRCCLCPARGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVD-CSRVPAH 524
RCCLCP GGAMK TTD RWAH+ACA+ +PE D + +D +V
Sbjct: 676 PVALDIPPRCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLLDVKKMEPIDGVKKVSKD 735
Query: 525 RFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIE 565
R+ C +C G ++CS C + +H C AGLC+E
Sbjct: 736 RWKLLCSICGVSYGACIQCSNNTCRVAYHPLCARAAGLCVE 776
>AT3G61740.1 | chr3:22851133-22856548 REVERSE LENGTH=1019
Length = 1018
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTXXXXXXXXXXX 467
CAVC + + ++ C+ C + VH CYG + + W C C
Sbjct: 549 CAVCRWVEDWEENKMIICNRCQVAVHQECYGVSKSQDLT--SWVCRACETPDIERD---- 602
Query: 468 XXXXXXRCCLCPARGGAMK-RTTDARWAHIACALLVPEVFFRDPDGRD-GVDCSRVPAHR 525
CCLCP +GGA+K + W H+ CA PEV F + + + V ++PA+
Sbjct: 603 -------CCLCPVKGGALKPSDVEGLWVHVTCAWFRPEVGFLNHENMEPAVGLFKIPANS 655
Query: 526 FATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXFCLE 585
F C +C+ G + C +C FH C AG +E + +C
Sbjct: 656 FLKVCTICKQTHGSCVHCC--KCATHFHAMCASRAGYNMELHCLEKNGVQRTRKSVYCSF 713
Query: 586 HTK 588
H K
Sbjct: 714 HRK 716
>AT4G27910.1 | chr4:13894694-13900256 FORWARD LENGTH=1028
Length = 1027
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGNPLASFIPD-GDWFCSVCTXXXXXXXXXX 466
CAVC + + I+ C+ C + VH CYG A + D W C C
Sbjct: 595 CAVCRWVEDWDYNKIIICNRCQIAVHQECYG---ARHVRDFTSWVCKACE---------- 641
Query: 467 XXXXXXXRCCLCPARGGAMKRT-TDARWAHIACALLVPEVFFRDPDGRD-GVDCSRVPAH 524
CCLCP +GGA+K T + W H+ CA PEV F + + V +P+
Sbjct: 642 -RPDIKRECCLCPVKGGALKPTDVETLWVHVTCAWFQPEVCFASEEKMEPAVGILSIPST 700
Query: 525 RFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXFCL 584
F C +C+ G +C +C +H C AG +E + +C
Sbjct: 701 NFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGYRMELHCLEKNGQQITKMVSYCA 758
Query: 585 EH 586
H
Sbjct: 759 YH 760
>AT5G53430.1 | chr5:21677623-21683166 FORWARD LENGTH=1044
Length = 1043
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Query: 408 CAVCGSTDGDPSDPIVFCDGCDLMVHASCYGN-PLASFIPDGDWFCSVCTXXXXXXXXXX 466
CAVC + + I+ C+ C + VH CYG + F W C C
Sbjct: 610 CAVCRWVEDWDYNKIIICNRCQIAVHQECYGTRNVRDFT---SWVCKAC----------- 655
Query: 467 XXXXXXXRCCLCPARGGAMKRT-TDARWAHIACALLVPEVFFRDPDGRD-GVDCSRVPAH 524
CCLCP +GGA+K T + W H+ CA PEV F + + + +P+
Sbjct: 656 ETPEIKRECCLCPVKGGALKPTDVETLWVHVTCAWFQPEVCFASEEKMEPALGILSIPSS 715
Query: 525 RFATACYVCESGGGCALECSQPRCGLGFHVSCGLDAGLCIEYQEAKXXXXXXXXXXXFCL 584
F C +C+ G +C +C +H C AG +E + +C
Sbjct: 716 NFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYCS 773
Query: 585 EH 586
H
Sbjct: 774 YH 775
>AT1G77800.1 | chr1:29253800-29260190 FORWARD LENGTH=1376
Length = 1375
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 53/144 (36%), Gaps = 6/144 (4%)
Query: 422 IVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTXXXXXXXXXXXXX-XXXXRCCLCPA 480
IV C C + VH CY S P W+C +C C LC
Sbjct: 975 IVVCSSCKVAVHIDCYKCAKESTGP---WYCELCAESSSEPSFNFGEKPNSSTECTLCGG 1031
Query: 481 RGGAMKRTTDARWAHIACALLVPEVFFRDPDGRDGVDCSRVPAHRFATACYVCESGGGCA 540
GA ++TT+ +W H CA E FR G+ + C VC+ G
Sbjct: 1032 TTGAFRKTTNGQWVHAFCAEWSLESTFR--RGQINPVQGMESLAKKTDNCCVCQRIYGAC 1089
Query: 541 LECSQPRCGLGFHVSCGLDAGLCI 564
+CS C FH SC AG +
Sbjct: 1090 TKCSYGNCQTTFHPSCARSAGFHM 1113
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 422 IVFCDGCDLMVHASCYGNPLASFIPDGDWFCSVCTXXXXXXXXXXXXXXXXXRCCLCPAR 481
++ C C VH CYG S P W CS C C LCP +
Sbjct: 295 LIVCTSCKATVHKKCYGLLEDSGKP---WLCSWCELENGRADSERP-------CLLCPKK 344
Query: 482 GGAMK----RTTD---ARWAHIACALLVPEVFFRDPDGRDGV-DCSRVPAHRFATACYVC 533
GG +K +T + A +AH+ C+L +PEV+ D + + + + R C +C
Sbjct: 345 GGILKPVLSKTENGGPAEFAHLFCSLWMPEVYIEDLKKMEPILNFPGIKETRRKLLCNLC 404
Query: 534 ESGGGCALEC 543
+ G + C
Sbjct: 405 KVKSGACIRC 414
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,149,459
Number of extensions: 338518
Number of successful extensions: 1141
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 9
Length of query: 607
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 503
Effective length of database: 8,255,305
Effective search space: 4152418415
Effective search space used: 4152418415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)