BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0173600 Os01g0173600|Os01g0173600
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0173600 Glyoxalase/bleomycin resistance protein/dioxyg... 421 e-118
Os05g0171900 Glyoxalase/bleomycin resistance protein/dioxyg... 250 5e-67
Os07g0657100 Glyoxalase/extradiol ring-cleavage dioxygenase... 164 5e-41
Os04g0538900 Glyoxalase/bleomycin resistance protein/dioxyg... 154 5e-38
>Os01g0173600 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 215
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/215 (95%), Positives = 205/215 (95%)
Query: 1 MVNTTAGVKCGGGGAALPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAW 60
MVNTTAGVKCGGGGAALPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAW
Sbjct: 1 MVNTTAGVKCGGGGAALPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAW 60
Query: 61 LFNYGIGIHLLQAEDPESMPPNKEINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRVEE 120
LFNYGIGIHLLQAEDPESMPPNKEINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRVEE
Sbjct: 61 LFNYGIGIHLLQAEDPESMPPNKEINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRVEE 120
Query: 121 GGVYVDQIFFHDPDGFMIEICTCDKLPVVPLDAAAAHSIFAGRSPPPPVACKIRPVKQPS 180
GGVYVDQIFFHDPDGFMIEICTCDKLPVVPLDAAAAHSIFAGRSPPPPVACKIRPVKQPS
Sbjct: 121 GGVYVDQIFFHDPDGFMIEICTCDKLPVVPLDAAAAHSIFAGRSPPPPVACKIRPVKQPS 180
Query: 181 ATKLGSVAAGGCVGEVIVVDAINXXXXXXXXXXMS 215
ATKLGSVAAGGCVGEVIVVDAIN MS
Sbjct: 181 ATKLGSVAAGGCVGEVIVVDAINGAAAAGGGGAMS 215
>Os05g0171900 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 208
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 117/154 (75%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 1 MVNTTA-GVKCGGGGAALPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGA 59
MVNT A G G+ LPL++LNH+S+VCRSL SLTFY D LGF VRRPGSFDFDGA
Sbjct: 1 MVNTAAVAAAKGSRGSGLPLASLNHISIVCRSLQESLTFYTDVLGFFPVRRPGSFDFDGA 60
Query: 60 WLFNYGIGIHLLQAEDPESMPPNKEINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRVE 119
WLFNYGIGIHLLQAEDP+S+P EINPKDNHISF CESM AV+RRLKE+G+ Y+QR VE
Sbjct: 61 WLFNYGIGIHLLQAEDPDSLPGKTEINPKDNHISFQCESMVAVERRLKELGIPYIQRCVE 120
Query: 120 EGGVYVDQIFFHDPDGFMIEICTCDKLPVVPLDA 153
EGG+YVDQIFFHDPDGFMIEIC CD LPVVPL A
Sbjct: 121 EGGIYVDQIFFHDPDGFMIEICNCDNLPVVPLGA 154
>Os07g0657100 Glyoxalase/extradiol ring-cleavage dioxygenase domain containing
protein
Length = 209
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 3/154 (1%)
Query: 17 LPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAWLFNYGIGIHLLQAEDP 76
+PL LNH+S +C+S+ S+ FY LGFV + RP + DF+GAWLFNYG+GIHL+Q +D
Sbjct: 45 MPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDA 104
Query: 77 ESMPPNK--EINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRV-EEGGVYVDQIFFHDP 133
P +++P DNHISF CE M +++RL EMG+ Y++R + EE G +DQ+FF DP
Sbjct: 105 RRAPDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDP 164
Query: 134 DGFMIEICTCDKLPVVPLDAAAAHSIFAGRSPPP 167
DGFMIEIC C+ L +VP A + R PP
Sbjct: 165 DGFMIEICNCENLELVPAGALGRLRLPRDRHNPP 198
>Os04g0538900 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 175
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 97/148 (65%), Gaps = 5/148 (3%)
Query: 14 GAALPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAWLFNYGIGIHLLQA 73
A++PL LNHVS C S+ S+ FYR LGF ++RP S +F+GAWL+ YG+GIHLLQ
Sbjct: 11 AASVPLVRLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYGMGIHLLQR 70
Query: 74 EDPE---SMP--PNKEINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRVEEGGVYVDQI 128
D S+P P INP NH+SF C M ++ RL+ M +V R+V +G VDQ+
Sbjct: 71 GDDADGCSIPTRPLPAINPMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWDGETVVDQL 130
Query: 129 FFHDPDGFMIEICTCDKLPVVPLDAAAA 156
FFHDPDG MIE+C C+ LPV+PL A+
Sbjct: 131 FFHDPDGNMIEVCNCENLPVIPLIVAST 158
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,646,008
Number of extensions: 398624
Number of successful extensions: 1451
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 4
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)