BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0170000 Os01g0170000|AK061224
(338 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0170000 Raffinose synthase family protein 662 0.0
Os04g0481100 Similar to Seed imbibition protein (Fragment) 234 5e-62
Os08g0495800 Raffinose synthase family protein 218 7e-57
Os07g0209100 Similar to Seed imbibition protein (Fragment) 216 2e-56
Os10g0468900 92 6e-19
Os12g0555400 Similar to Raffinose synthase protein 76 4e-14
Os11g0435500 Raffinose synthase family protein 70 2e-12
>Os01g0170000 Raffinose synthase family protein
Length = 338
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/338 (95%), Positives = 322/338 (95%)
Query: 1 NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL 60
NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL
Sbjct: 1 NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL 60
Query: 61 WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILR 120
WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILR
Sbjct: 61 WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILR 120
Query: 121 CERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFS 180
CERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFS
Sbjct: 121 CERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFS 180
Query: 181 VPVTARASPADVEWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPV 240
VPVTARASPADVEWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPV
Sbjct: 181 VPVTARASPADVEWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPV 240
Query: 241 RAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXXXMVAYSSARPR 300
RAIVSPELGIGFAPIGLANMLNAGGAVQGFEAAR MVAYSSARPR
Sbjct: 241 RAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARKDGDVAAEVAVKGAGEMVAYSSARPR 300
Query: 301 LCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY 338
LCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY
Sbjct: 301 LCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY 338
>Os04g0481100 Similar to Seed imbibition protein (Fragment)
Length = 663
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 187/343 (54%), Gaps = 18/343 (5%)
Query: 1 NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL 60
GN +I M H D + ++ A+ R +DF +P+ +Q H+ A+NSL
Sbjct: 331 KGNNLICCMSHNTDSIFSSLKS-AVARASEDFMPREPT--------MQTLHIATVAFNSL 381
Query: 61 WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILR 120
+G PDWDMF S H A FH A+RA+SGG VYVSD G HDF +L++L LPDG ILR
Sbjct: 382 LLGEIFIPDWDMFHSKHESAEFHGAARALSGGGVYVSDKPGMHDFSVLKKLVLPDGLILR 441
Query: 121 CERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGG-WSREARRNMCAAGF 179
+ PTRDCLF DP+ DGK++LKIWN+NKFSGV+G FNCQG G W+ + N
Sbjct: 442 TKHAGRPTRDCLFNDPVMDGKSLLKIWNLNKFSGVIGVFNCQGAGNWTYPVKEN-AHVPT 500
Query: 180 SVPVTARASPADVEWSHGGGGGD---RFAVYFVEARKLQLLRRDESVELTLEPFTYELLV 236
+V +T SP+DVE G D AV+ + L L++ +++E++L T ++
Sbjct: 501 TVCITGDLSPSDVELLEEIAGDDWNGETAVFAFNSCSLSRLQKHQTMEVSLSTMTCKIYT 560
Query: 237 VAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXXXMVAYSS 296
+A ++ + FAP+GL NM N+GGA++ + AYS+
Sbjct: 561 IALIKVFGG---FVQFAPLGLVNMYNSGGALENVTSTGDCSEITIQIQCRGPGRFGAYSA 617
Query: 297 ARPRLCKVNGQDAEFKY-EDGIVTVDVPWTGSSKKLSRVEYFY 338
RP +C V+ + EFK+ +DG + D+ S L +E Y
Sbjct: 618 TRPEICSVDEHEVEFKHTDDGFLAFDLSHGSSQDNLRNIEILY 660
>Os08g0495800 Raffinose synthase family protein
Length = 712
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 160/269 (59%), Gaps = 17/269 (6%)
Query: 3 NGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWM 62
NG+I M H D L ++ A+ R DDFW DP+ H+ AYN++++
Sbjct: 428 NGIICCMSHNTD-NLYSSKRSAVVRASDDFWPRDPAS--------HTIHIASVAYNTVFL 478
Query: 63 GAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
G F+ PDWDMF S HP A +HAA+RAV G +YVSD G HDF+LL++L LPDG+ILR +
Sbjct: 479 GEFMQPDWDMFHSVHPMAEYHAAARAVGGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAK 538
Query: 123 RYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFSVP 182
PTRDCLF+DP DGK++LKIWN+N+ SGV+GAFNCQG GW R ++N+
Sbjct: 539 LPGRPTRDCLFSDPARDGKSILKIWNLNEHSGVIGAFNCQGAGWCRVGKKNLVHDEQPAT 598
Query: 183 VTARASPADVEW----SHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVA 238
VT DV + G GD VY ++ L ++ S+ +TL+ YE+ V
Sbjct: 599 VTGVIRAQDVHHLATVAADGWNGD-VIVYSHIGGEVTCLPKNASLPVTLKTREYEVFTVV 657
Query: 239 PVRAIVSPELGIGFAPIGLANMLNAGGAV 267
P++ + + G+ FA +GL M N+GGAV
Sbjct: 658 PLKKL---DNGVSFAAVGLIGMFNSGGAV 683
>Os07g0209100 Similar to Seed imbibition protein (Fragment)
Length = 763
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 178/331 (53%), Gaps = 22/331 (6%)
Query: 3 NGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWM 62
NG I+ M H D ML A+ R DDF+ DP+ H+ AYN++++
Sbjct: 430 NGCISCMCHNTD-MLYSARQTAVVRASDDFYPRDPAS--------HTIHVASVAYNTVFL 480
Query: 63 GAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
G F+ PDWDMF S HP A +H A+RA+ G P+YVSD G H+FDLLR+L LPDG++LR
Sbjct: 481 GEFMQPDWDMFHSLHPAAEYHGAARAIGGCPIYVSDKPGNHNFDLLRKLVLPDGSVLRAR 540
Query: 123 RYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMC--AAGFS 180
PTRDCLF+DP DG+++LKIWN+N GV+G FNCQG GW R A++ AA +
Sbjct: 541 LPGRPTRDCLFSDPARDGESLLKIWNLNNCGGVVGVFNCQGAGWCRVAKKTRVHDAAPGT 600
Query: 181 VPVTARASPAD----VEWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLV 236
+ RA D V GGG VY AR+L L R ++ +TL YE+
Sbjct: 601 LTGAVRADDVDAIAQVAGGDGGGWDGEAVVYAHRARELVRLPRGAALPVTLGALEYEVFH 660
Query: 237 VAPVR--AIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXXXMVAY 294
V PVR A + FAP+GL +M NAGGAV E AY
Sbjct: 661 VCPVRAIAAAPGGAAVAFAPVGLLDMFNAGGAV---EECAVDAAAAVALRVRGCGRFGAY 717
Query: 295 SSARPRLCKVNGQDAEFKY--EDGIVTVDVP 323
S RP C ++G D F Y + G+V VD+P
Sbjct: 718 FSRRPARCALDGADVGFTYDGDTGLVAVDLP 748
>Os10g0468900
Length = 204
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 74/133 (55%), Gaps = 20/133 (15%)
Query: 202 DRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFAPIGLANML 261
D F VYFVEA+KLQLLRR+ES ELTLEPFTYELL+ E I F PIGLANML
Sbjct: 31 DCFTVYFVEAQKLQLLRRNESFELTLEPFTYELLL----------ERRISFVPIGLANML 80
Query: 262 NAGGAVQGFEAARX--XXXXXXXXXXXXXXXMVAYSSARPRLCKVNGQDAEFKY-----E 314
N GGAVQGF+ + AYSSAR G+ AE ++ E
Sbjct: 81 NVGGAVQGFQTVKKDDGGGGDVVAEVAVKGAKEAYSSAR-LWAGARGEAAEERHGWSRAE 139
Query: 315 DGIVTVDVPWTGS 327
DG +DVP T S
Sbjct: 140 DG--ELDVPATES 150
>Os12g0555400 Similar to Raffinose synthase protein
Length = 198
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 72 MFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCERYALPTRDC 131
+FQS HP A +H A+ A+ G P+YVSD G H+ +LLR+L LP G+ LR PTR+C
Sbjct: 58 LFQSLHPAAKYHDAAMAIGGCPIYVSDKPGNHNLELLRKLVLPSGSGLRVRLPGRPTREC 117
Query: 132 LFADPLHDG 140
LF+D DG
Sbjct: 118 LFSDQARDG 126
>Os11g0435500 Raffinose synthase family protein
Length = 95
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 74 QSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
QS HP A +HAA+RAVSG +YVSD G HDF+LL++L LPDG+ILR +
Sbjct: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAK 49
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,060,285
Number of extensions: 608594
Number of successful extensions: 1608
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 7
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)