Os11g0435500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Raffinose synthase family protein.
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Os11g0435500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Raffinose synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201 | 0.666 | 4.75 | 0.616 | 1.09 | 1.4 | -0.18 | 0.528 | 1.2 | 2.18 | 93 | 214 | -- | -- |
| 201.25 | 0.661 | 4.76 | 0.624 | 1.09 | 1.41 | -0.0771 | -- | 1.2 | 2.21 | 93 | 211 | -- | -- |
| 201.1 | 0.66 | 4.76 | 0.622 | 1.09 | 1.39 | -- | 0.423 | 1.2 | 2.21 | 93 | 212 | -- | -- |
| 201.27 | 0.661 | 4.76 | 0.626 | 1.1 | 1.4 | -- | -- | 1.2 | 2.22 | 93 | 212 | -- | -- |
| 253.47 | 0.742 | 4.71 | 0.64 | -- | 1.54 | -- | 0.118 | 1.37 | -- | 87.54 | 167 | -- | -- |
| 223.68 | 0.701 | 4.78 | 0.73 | 1.43 | -- | 0.401 | -- | 1.05 | 3.01 | -- | -- | -- | -- |
| 224.2 | 0.701 | 4.78 | 0.722 | 1.43 | -- | -- | -- | 1.05 | 2.97 | -- | -- | -- | -- |
| 252.86 | 0.741 | 4.73 | 0.58 | -- | 1.47 | -- | -- | 1.32 | -- | 87.52 | 170 | -- | -- |
| 211.49 | 0.677 | 4.77 | -- | 1.09 | 1.5 | -- | -- | 1.14 | 2.16 | 93 | 211 | -- | -- |
| 340.96 | 0.863 | 4.78 | 0.782 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 237.92 | 0.722 | 4.8 | -- | 1.44 | -- | -- | -- | 0.968 | 2.97 | -- | -- | -- | -- |
| 253.01 | 0.741 | 4.78 | -- | -- | 1.32 | -- | -- | 1.1 | -- | 72 | 106 | -- | -- |
| 357.1 | 0.882 | 4.8 | -- | -- | -- | -- | -- | 0.999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 2 | 191.75 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 5 | 192.49 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 9 | 192.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 10 | 192.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 11 | 192.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 13 | 192.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 14 | 192.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 25 | 193.74 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 32 | 194.01 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 52 | 194.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 53 | 194.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 54 | 194.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 56 | 194.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 64 | 194.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 72 | 195.12 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 86 | 195.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 88 | 195.50 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 92 | 195.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 93 | 195.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 95 | 195.67 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 109 | 195.81 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 121 | 195.87 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 132 | 195.94 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 146 | 195.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 152 | 195.98 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 156 | 195.99 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 157 | 195.99 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 240 | 196.25 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 312 | 196.42 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 318 | 196.43 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 325 | 196.44 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 326 | 196.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 342 | 196.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 346 | 196.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 348 | 196.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 355 | 196.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 378 | 196.53 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 389 | 196.54 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 436 | 196.61 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 453 | 196.64 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 529 | 196.72 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 533 | 196.73 | atmosphere | 1010.0 | 43200 | > th | dose dependent | no | NA | NA |
| 550 | 196.74 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 573 | 196.76 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 644 | 196.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 654 | 196.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 656 | 196.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 668 | 196.88 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 747 | 196.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 810 | 197.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 820 | 197.12 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 935 | 197.33 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 951 | 197.37 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 955 | 197.38 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 990 | 197.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 2 |