BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0435500 Os11g0435500|AK069963
(95 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55740.1 | chr1:20835507-20838707 REVERSE LENGTH=755 99 7e-22
AT3G57520.1 | chr3:21288982-21292694 REVERSE LENGTH=774 97 1e-21
AT5G20250.4 | chr5:6833730-6836635 FORWARD LENGTH=845 86 4e-18
AT5G40390.1 | chr5:16161720-16165085 FORWARD LENGTH=784 75 5e-15
AT4G01970.1 | chr4:854073-856953 REVERSE LENGTH=877 53 4e-08
>AT1G55740.1 | chr1:20835507-20838707 REVERSE LENGTH=755
Length = 754
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 47/51 (92%)
Query: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAKLP 51
S+HPMAEYHAAARAV GCAIYVSDKPG HDFNLL+KLVL DGSILRAKLP
Sbjct: 488 HSLHPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLRKLVLRDGSILRAKLP 538
>AT3G57520.1 | chr3:21288982-21292694 REVERSE LENGTH=774
Length = 773
Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 48/51 (94%)
Query: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAKLP 51
S+HP AEYHAAARAV GCAIYVSDKPGNH+F+LL+KLVLPDGS+LRAKLP
Sbjct: 484 HSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLP 534
>AT5G20250.4 | chr5:6833730-6836635 FORWARD LENGTH=845
Length = 844
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAKLP 51
SVHP AEYHA+ARA+SG +YVSD PG H+F LL+KLVLPDGSILRA+LP
Sbjct: 577 HSVHPAAEYHASARAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLP 627
>AT5G40390.1 | chr5:16161720-16165085 FORWARD LENGTH=784
Length = 783
Score = 75.5 bits (184), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPGNHDFNLLKKLVLPDGSILRAK 49
QS HP AE+HAA+RA+SG IY+SD G HDF+LLK+LVLP+GSILR +
Sbjct: 521 QSTHPCAEFHAASRAISGGPIYISDCVGKHDFDLLKRLVLPNGSILRCE 569
>AT4G01970.1 | chr4:854073-856953 REVERSE LENGTH=877
Length = 876
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 1 QSVHPMAEYHAAARAVSGCAIYVSDKPG--NHDFNLLKKLVLPDGSILR 47
QS H AEYHAA+RA+ G +Y+SD G +H+F+L+KKL DG+I R
Sbjct: 605 QSDHVCAEYHAASRAICGGPVYLSDHLGKASHNFDLIKKLAFFDGTIPR 653
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.129 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,864,848
Number of extensions: 54549
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 5
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)