Os01g0170000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Raffinose synthase family protein.
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Os01g0170000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Raffinose synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.11 | 0.428 | 12.7 | -2.24 | 1.62 | -1.78 | -0.178 | -1.29 | 0.0751 | 5.78 | 0.4658 | 1478 | 17.9 | 0.967 |
| 84.92 | 0.429 | 12.7 | -2.48 | 1.65 | -1.65 | -0.186 | -- | 0.0724 | 5.77 | 0.4408 | 1477 | 17.9 | 0.932 |
| 83.14 | 0.425 | 12.7 | -2.24 | 1.62 | -1.76 | -- | -1.24 | 0.0753 | 5.77 | 0.4675 | 1477 | 17.9 | 0.947 |
| 84.66 | 0.429 | 12.7 | -2.49 | 1.64 | -1.66 | -- | -- | 0.0766 | 5.72 | 0.4735 | 1478 | 17.9 | 0.9 |
| 209.45 | 0.674 | 12.8 | -2.45 | -- | -2.35 | -- | -0.667 | -0.0095 | -- | 0.57 | 1525 | 17.8 | 1.12 |
| 170.31 | 0.612 | 12.7 | -2.81 | 1.74 | -- | -0.0839 | -- | 0.0835 | 5.84 | -- | -- | -- | -- |
| 170.33 | 0.611 | 12.7 | -2.81 | 1.73 | -- | -- | -- | 0.0838 | 5.83 | -- | -- | -- | -- |
| 208.4 | 0.672 | 12.8 | -2.42 | -- | -2.6 | -- | -- | 0.0659 | -- | 0.6941 | 1516 | 17.9 | 1.26 |
| 164.71 | 0.598 | 12.8 | -- | 1.57 | -2.2 | -- | -- | 0.0144 | 5.48 | 5.625 | 10159 | 17.8 | 0.923 |
| 326.33 | 0.844 | 12.7 | -2.75 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 377.83 | 0.909 | 12.6 | -- | 1.69 | -- | -- | -- | 0.396 | 5.91 | -- | -- | -- | -- |
| 231.38 | 0.708 | 12.8 | -- | -- | -3.62 | -- | -- | 0.305 | -- | 6.907 | 10152 | 17.8 | 1.45 |
| 526.22 | 1.07 | 12.7 | -- | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 4 | 86.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 15 | 87.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 16 | 87.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 18 | 87.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 20 | 87.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 26 | 88.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 27 | 88.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 43 | 89.72 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 44 | 89.82 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 45 | 89.87 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 59 | 91.13 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 93 | 91.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 109 | 92.15 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 110 | 92.18 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 115 | 92.29 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 128 | 92.51 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 146 | 92.78 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 178 | 93.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 179 | 93.10 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 206 | 93.58 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 221 | 93.70 | wind | 3 | 43200 | > th | dose dependent | sin | 23 | NA |
| 238 | 93.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 239 | 94.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 241 | 94.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 259 | 94.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 268 | 94.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 273 | 94.40 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 275 | 94.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 284 | 94.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 287 | 94.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 290 | 94.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 324 | 94.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 376 | 95.14 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 435 | 95.38 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 470 | 95.59 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 472 | 95.59 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 533 | 95.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 551 | 95.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 558 | 95.99 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 594 | 96.14 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 611 | 96.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 711 | 96.68 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 737 | 96.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 802 | 97.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 855 | 97.36 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 863 | 97.38 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 924 | 97.60 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 933 | 97.62 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 985 | 97.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 993 | 97.86 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 994 | 97.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 21 |