BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0170000 Os01g0170000|AK061224
(338 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40390.1 | chr5:16161720-16165085 FORWARD LENGTH=784 434 e-122
AT4G01970.1 | chr4:854073-856953 REVERSE LENGTH=877 317 8e-87
AT5G20250.4 | chr5:6833730-6836635 FORWARD LENGTH=845 237 8e-63
AT3G57520.1 | chr3:21288982-21292694 REVERSE LENGTH=774 231 3e-61
AT1G55740.1 | chr1:20835507-20838707 REVERSE LENGTH=755 227 6e-60
>AT5G40390.1 | chr5:16161720-16165085 FORWARD LENGTH=784
Length = 783
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/343 (60%), Positives = 248/343 (72%), Gaps = 12/343 (3%)
Query: 1 NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL 60
NGNGVIASMEHCNDFM LGTEA++LGRVGDDFWCTDPSGDP+GTFWLQGCHMVHCAYNSL
Sbjct: 448 NGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSL 507
Query: 61 WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILR 120
WMG FI PDWDMFQSTHPCA FHAASRA+SGGP+Y+SD VG HDFDLL+RL LP+G+ILR
Sbjct: 508 WMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYISDCVGKHDFDLLKRLVLPNGSILR 567
Query: 121 CERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFS 180
CE YALPTRD LF DPLHDGKTMLKIWN+NK++GV+GAFNCQGGGW RE RRN C +
Sbjct: 568 CEYYALPTRDRLFEDPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCRETRRNQCFSECV 627
Query: 181 VPVTARASPADVEWSHGG-----GGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELL 235
+TA SP DVEW+ G + FA++ +++KL L ++ +ELTLEPF +EL+
Sbjct: 628 NTLTATTSPKDVEWNSGSSPISIANVEEFALFLSQSKKLLLSGLNDDLELTLEPFKFELI 687
Query: 236 VVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXXXMVAYS 295
V+PV I + FAPIGL NMLN GA++ Y+
Sbjct: 688 TVSPVVTIEGNS--VRFAPIGLVNMLNTSGAIRSL----VYNDESVEVGVFGAGEFRVYA 741
Query: 296 SARPRLCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY 338
S +P C ++G+ EF YED +V V VPW+G LS ++Y +
Sbjct: 742 SKKPVSCLIDGEVVEFGYEDSMVMVQVPWSGPD-GLSSIQYLF 783
>AT4G01970.1 | chr4:854073-856953 REVERSE LENGTH=877
Length = 876
Score = 317 bits (811), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 216/351 (61%), Gaps = 19/351 (5%)
Query: 1 NGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSL 60
NG VIASM+ CN+F L T+ +++GRVGDDFW DP GDP G +WLQG HM+HC+YNS+
Sbjct: 532 NGTDVIASMQQCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMIHCSYNSI 591
Query: 61 WMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVG--CHDFDLLRRLALPDGTI 118
WMG I PDWDMFQS H CA +HAASRA+ GGPVY+SD +G H+FDL+++LA DGTI
Sbjct: 592 WMGQMIQPDWDMFQSDHVCAEYHAASRAICGGPVYLSDHLGKASHNFDLIKKLAFFDGTI 651
Query: 119 LRCERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAG 178
RC YALPTRD LF +PL D +++LKI+N NKF GV+G FNCQG GWS E R
Sbjct: 652 PRCVHYALPTRDSLFKNPLFDKESILKIFNFNKFGGVIGTFNCQGAGWSPEEHRFKGYKE 711
Query: 179 FSVPVTARASPADVEWSHGGGG--------GDRFAVYFVEARKLQLLR-RDESVELTLEP 229
V+ +D+EW GD + VY ++ ++ + + E++++TLEP
Sbjct: 712 CYTTVSGTVHVSDIEWDQNPEAAGSQVTYTGD-YLVYKQQSEEILFMNSKSEAMKITLEP 770
Query: 230 FTYELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXX 289
++LL PV +VS G+ FAP+GL NM N G VQ +
Sbjct: 771 SAFDLLSFVPVTELVSS--GVRFAPLGLINMFNCVGTVQDM---KVTGDNSIRVDVKGEG 825
Query: 290 XMVAYSSARPRLCKVNGQDAEFKYED--GIVTVDVPWTGSSKKLSRVEYFY 338
+AYSS+ P C +N ++AEFK+E+ G ++ VPW S +S + + +
Sbjct: 826 RFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEESGGISHLSFTF 876
>AT5G20250.4 | chr5:6833730-6836635 FORWARD LENGTH=845
Length = 844
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 190/335 (56%), Gaps = 37/335 (11%)
Query: 3 NGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWM 62
NG IA M H D + +A A+ R DDF+ DP H+ AYNS+++
Sbjct: 515 NGCIACMSHNTDALYCSKQA-AVIRASDDFYPRDPVS--------HTIHIASVAYNSVFL 565
Query: 63 GAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
G F+ PDWDMF S HP A +HA++RA+SGGP+YVSD+ G H+F+LLR+L LPDG+ILR
Sbjct: 566 GEFMQPDWDMFHSVHPAAEYHASARAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRAR 625
Query: 123 RYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNM-------- 174
PTRDCLFADP DG ++LKIWN+NK++GVLG +NCQG WS R+N+
Sbjct: 626 LPGRPTRDCLFADPARDGVSLLKIWNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDS 685
Query: 175 ---CAAGFSVPVTARASPADVEWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFT 231
G V + AS W+ GD AVY +L ++ + S+ ++L+
Sbjct: 686 LTGSIRGRDVHSISEASTDPTTWN-----GD-CAVYSQSRGELIVMPYNVSLPVSLKIRE 739
Query: 232 YELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQG--FEAARXXXXXXXXXXXXXXX 289
+E+ V+P+ +V G+ FAPIGL NM N+GGA++G +EA +
Sbjct: 740 HEIFTVSPISHLVD---GVSFAPIGLVNMYNSGGAIEGLRYEAEKMKVVMEVKGCGKFG- 795
Query: 290 XMVAYSSARPRLCKVNGQDAEFKYE--DGIVTVDV 322
+YSS +P+ C V + F+Y+ G+VT ++
Sbjct: 796 ---SYSSVKPKRCVVESNEIAFEYDSSSGLVTFEL 827
>AT3G57520.1 | chr3:21288982-21292694 REVERSE LENGTH=774
Length = 773
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 188/352 (53%), Gaps = 42/352 (11%)
Query: 3 NGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWM 62
NG I+ M H D L + A+ R DDF+ DP+ H+ AYNSL++
Sbjct: 422 NGCISCMCHNTD-GLYSAKQTAIVRASDDFYPRDPAS--------HTIHIASVAYNSLFL 472
Query: 63 GAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
G F+ PDWDMF S HP A +HAA+RAV G +YVSD G H+FDLLR+L LPDG++LR +
Sbjct: 473 GEFMQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAK 532
Query: 123 RYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMC--AAGFS 180
PTRDCLFADP DG ++LKIWN+NKF+G++G FNCQG GW +E ++N + +
Sbjct: 533 LPGRPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGT 592
Query: 181 VPVTARASPADVEWSHGGG--GGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVA 238
+ + RA AD+ G GD VY + ++ L + S+ LTL+ YEL ++
Sbjct: 593 LTGSIRADDADLISQVAGEDWSGDSI-VYAYRSGEVVRLPKGASIPLTLKVLEYELFHIS 651
Query: 239 PVRAIVSPELGIGFAPIGLANMLNAGGAVQG------------FEAARXXXXXXXXXXXX 286
P++ I I FAPIGL +M N+ GA++ F
Sbjct: 652 PLKEITE---NISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNR 708
Query: 287 XXXXMV-----------AYSSARPRLCKVNGQDAEFKY--EDGIVTVDVPWT 325
+V AYSS RP C V + +F Y E G+VT+++P T
Sbjct: 709 SPTALVSVSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLPVT 760
>AT1G55740.1 | chr1:20835507-20838707 REVERSE LENGTH=755
Length = 754
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 173/324 (53%), Gaps = 20/324 (6%)
Query: 3 NGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWM 62
NG+I+ M H D L + A+ R DDFW DP+ H+ AYN+L++
Sbjct: 426 NGIISCMSHNTD-GLYSAKKTAVIRASDDFWPRDPAS--------HTIHIASVAYNTLFL 476
Query: 63 GAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCE 122
G F+ PDWDMF S HP A +HAA+RAV G +YVSD G HDF+LLR+L L DG+ILR +
Sbjct: 477 GEFMQPDWDMFHSLHPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLRKLVLRDGSILRAK 536
Query: 123 RYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFSVP 182
PT DC F+DP+ D K++LKIWN+N+F+GV+G FNCQG GW + +R +
Sbjct: 537 LPGRPTSDCFFSDPVRDNKSLLKIWNLNEFTGVIGVFNCQGAGWCKNEKRYLIHDQEPGT 596
Query: 183 VTARASPADVEWSHGGGG----GDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVA 238
++ DV + H GD VY +L L +D S+ +TL P YE+ V
Sbjct: 597 ISGCVRTNDVHYLHKVAAFEWTGDSI-VYSHLRGELVYLPKDTSLPVTLMPREYEVFTVV 655
Query: 239 PVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARXXXXXXXXXXXXXXXXMVAYSSA- 297
PV+ G FAP+GL M N+GGA+ + YSS
Sbjct: 656 PVKEFSD---GSKFAPVGLMEMFNSGGAIVSLRYDDEGTKFVVRMKLRGSGLVGVYSSVR 712
Query: 298 RPRLCKVNGQDAEFKY--EDGIVT 319
RPR V+ D E++Y E G+VT
Sbjct: 713 RPRSVTVDSDDVEYRYEPESGLVT 736
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,685,730
Number of extensions: 327656
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 239
Effective length of database: 8,392,385
Effective search space: 2005780015
Effective search space used: 2005780015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)