BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0158000 Os01g0158000|AK103127
(528 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0158000 Importin alpha-2 subunit 975 0.0
Os05g0155500 Importin alpha-1b subunit 168 1e-41
Os01g0343200 Similar to Importin alpha-1b subunit 167 1e-41
Os01g0253300 Importin alpha-1a subunit 166 5e-41
AK100133 164 1e-40
Os07g0688300 Similar to Importin alpha 1 114 2e-25
>Os01g0158000 Importin alpha-2 subunit
Length = 528
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/513 (94%), Positives = 486/513 (94%)
Query: 16 LQHHREALKSSVRNTAASRRREQAIAIGKERREALIRAKRVCRAPISGSXXXXXXXXXXX 75
LQHHREALKSSVRNTAASRRREQAIAIGKERREALIRAKRVCRAPISGS
Sbjct: 16 LQHHREALKSSVRNTAASRRREQAIAIGKERREALIRAKRVCRAPISGSDEAEMEEGDMV 75
Query: 76 XXXXKACLEAKTAHAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAG 135
KACLEAKTAHAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAG
Sbjct: 76 VDEEKACLEAKTAHAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAG 135
Query: 136 AVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSXXXXXXXXXXXXGEKSSTLVAE 195
AVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKS GEKSSTLVAE
Sbjct: 136 AVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSLLPALPLLIAHLGEKSSTLVAE 195
Query: 196 QCAWAIGNVAGEGAELRSTLLAQGALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKAA 255
QCAWAIGNVAGEGAELRSTLLAQGALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKAA
Sbjct: 196 QCAWAIGNVAGEGAELRSTLLAQGALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKAA 255
Query: 256 NELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRLF 315
NELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRLF
Sbjct: 256 NELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRLF 315
Query: 316 SSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKESS 375
SSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKESS
Sbjct: 316 SSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKESS 375
Query: 376 WALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPK 435
WALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPK
Sbjct: 376 WALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPK 435
Query: 436 IIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGIE 495
IIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGIE
Sbjct: 436 IIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGIE 495
Query: 496 AMERFQFHENEQMRNMANGLVDEYFGEDYGLDE 528
AMERFQFHENEQMRNMANGLVDEYFGEDYGLDE
Sbjct: 496 AMERFQFHENEQMRNMANGLVDEYFGEDYGLDE 528
>Os05g0155500 Importin alpha-1b subunit
Length = 534
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/522 (28%), Positives = 239/522 (45%), Gaps = 50/522 (9%)
Query: 20 REALKSSVRNTAASRRRE-QAIAIGKERREALIRAKRVCRAPISGSXXXXXXXXXXXXXX 78
R K +V RRRE + I K RRE + KR P + +
Sbjct: 13 RSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSA 72
Query: 79 XKACLEAKTA--HAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAGA 136
+ LE A AV+ SA+ ++EA R+LLS P ++ I G
Sbjct: 73 LQQKLEGLPAMVQAVQSDDSAV----------QLEATTQFRKLLSIERSPPIEEVINTGV 122
Query: 137 VPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSXXXXXXXXXXXXGEKS-STLVAE 195
VP + +L + EAAW LTNIA+G + TK S S V E
Sbjct: 123 VPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVRE 182
Query: 196 QCAWAIGNVAGEGAELRSTLLAQGALRP-LTRLMFSSKGSTARTAAWAMSNLIKG-PDPK 253
Q WA+GNVAG+ + R +LA G L P L +L +K S R A W +SN +G P P
Sbjct: 183 QAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPN 242
Query: 254 AANELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSV-PQLLIG 312
+ L+A+ + +DEE+ T+ W + YLS ++ I ++ S V P+L+
Sbjct: 243 ----FEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLV-- 296
Query: 313 RLFSSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDN-RVLR 371
L + +LIP LR +GN++ DD V I QAL L+ L +++ + ++
Sbjct: 297 ELLMHPSASVLIPALRTVGNIVTGDDMQTQCV------IDHQALPCLLNLLTNNHKKSIK 350
Query: 372 KESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNC 431
KE+ W +SNI AG+ E + + + L+ L+ + +FDI++EAA+ + N T +
Sbjct: 351 KEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHD- 409
Query: 432 ELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMR----------GYPN 481
+++LVA G + L+ D + L+ LE +++ G N
Sbjct: 410 -----QIKYLVA---QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVN 461
Query: 482 KQGPKLVEMEDGIEAMERFQFHENEQMRNMANGLVDEYFGED 523
++++ +G+E +E Q H+N ++ A +++ Y+ E+
Sbjct: 462 SYA-QMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEE 502
>Os01g0343200 Similar to Importin alpha-1b subunit
Length = 564
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 245/521 (47%), Gaps = 56/521 (10%)
Query: 20 REALKSSVRNTAASRRREQ-AIAIGKERREALIRAKRVCRAPISGSXXXXXXXXXXXXXX 78
++ K+S+ RRRE + + K R+ ++ KR R P + +
Sbjct: 13 QKGYKASMDAAEGRRRREDITVILRKADRDRALKEKR--RRPTATAAA------------ 58
Query: 79 XKACLEAKTAHAVEELKSALSIQGKGVQKK----KIEALRDLRRLLSQPEVPLVDTAIKA 134
+ +A + A+E+ +L + +G+ ++E+ R+LLS P +D I++
Sbjct: 59 -EGLPQAAHSSAIEKKLESLPMMVQGLYSDDSSMQLESTTQFRKLLSVDHCPPIDEVIRS 117
Query: 135 GAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSXXXXXXXXXXXXGEKSS-TLV 193
G +P V++L+ + EAAW LTNIA+G T + S V
Sbjct: 118 GVLPRFVEFLTREEYPQLQFEAAWALTNIASGTAANTMAVIEHGAVPIFVKLLSSPREDV 177
Query: 194 AEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTRLMFSSKGSTARTAAWAMSNLIKG--- 249
EQ WA+GNVAG+ + R+ +L GA+ P L +L +K S R +AW +SN +G
Sbjct: 178 REQAVWALGNVAGDSTKCRNLVLMHGAMLPLLQQLNEHAKLSMLRNSAWTLSNFCRGKPQ 237
Query: 250 PDPKAANELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQL 309
PD K + VL +I S +DEE+ T+ W + YLS S+ I ++ + V
Sbjct: 238 PDFKHVEPALP---VLRELILS---QDEEILTDSCWALSYLSDGSNDNIQAVIETGVCDW 291
Query: 310 LIGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCL-KSDNR 368
L+ L S + +LIP LR +GN++ DD + VGH QAL L L + +
Sbjct: 292 LV-ELLSHPSPVVLIPALRTVGNIVTGDDAQTQCI--VGH---PQALPCLFNLLTTTQKK 345
Query: 369 VLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPT 428
+++E+ W +SNI AG+ E + + S L+ L+ +FD+++EA + + N T
Sbjct: 346 SVKREACWTISNITAGTKEQIQAVIDSNIIAPLLHLLQHAEFDVKKEAVWAISNATSGGT 405
Query: 429 GNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQG---- 484
N +E+LV+ G + L+ D T L+ L+ ++R K+
Sbjct: 406 FN------QIEYLVS---QGCIKPLCDLLVHQDSKTVLTCLEALDNILRVGEAKKNLGAC 456
Query: 485 -----PKLVEMEDGIEAMERFQFHENEQMRNMANGLVDEYF 520
+V+ DG++ +E Q H+N ++ N A +++ Y+
Sbjct: 457 NMNIFVPMVDEADGLDKIEDLQNHDNVEIYNKAVYVLESYW 497
>Os01g0253300 Importin alpha-1a subunit
Length = 526
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 144/519 (27%), Positives = 239/519 (46%), Gaps = 54/519 (10%)
Query: 19 HREALKSSVRNTAASRRRE-QAIAIGKERREALIRAKRVCRAPISGSXXXXXXXXXXXXX 77
R K +V RRRE + I K RRE + KR
Sbjct: 12 RRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKR------------------REGL 53
Query: 78 XXKACLEAKTAHAVEELKSALSIQGKGVQKK----KIEALRDLRRLLSQPEVPLVDTAIK 133
+A + A A V++ +L GV ++EA R+LLS P ++ I+
Sbjct: 54 QAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ 113
Query: 134 AGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSXXXX-XXXXXXXXGEKSSTL 192
+G VP VQ+L+ + EAAW LTNIA+G E TK SS
Sbjct: 114 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDD 173
Query: 193 VAEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTRLMFSSKGSTARTAAWAMSNLIKGPD 251
V EQ WA+GNVAG+ + R +LA GAL P L +L +K S R A W +SN +G
Sbjct: 174 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-K 232
Query: 252 PKAANELITIDGVLNAIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSV-PQLL 310
P+ + E L A+ + DEE+ T+ W + YLS ++ I ++ + V P+L+
Sbjct: 233 PQPSFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290
Query: 311 IGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVL 370
L + +LIP LR +GN++ DD + + H + LS L + LK + +
Sbjct: 291 --ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI--IDHQALPCLLSLLTQNLK---KSI 343
Query: 371 RKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGN 430
+KE+ W +SNI AG+ + + + + L+ L+ + +FDI++EAA+ + N +G
Sbjct: 344 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN---ATSGG 400
Query: 431 CELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTAGLGLQFLELVMR-GYPNKQ------ 483
+ + +V G + L+ D+ + L+ LE +++ G +K
Sbjct: 401 SH------DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDV 454
Query: 484 --GPKLVEMEDGIEAMERFQFHENEQMRNMANGLVDEYF 520
++++ +G+E +E Q H+N ++ A +++ Y+
Sbjct: 455 NVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493
>AK100133
Length = 504
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 209/430 (48%), Gaps = 37/430 (8%)
Query: 109 KIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEP 168
++EA R+LLS P ++ I G VP + +L + EAAW LTNIA+G
Sbjct: 65 QLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTS 124
Query: 169 EETKSXXXXXXXXXXXXGEKS-STLVAEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTR 226
+ TK S S V EQ WA+GNVAG+ + R +LA G L P L +
Sbjct: 125 DNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQ 184
Query: 227 LMFSSKGSTARTAAWAMSNLIKG-PDPKAANELITIDGVLNAIIASLEKEDEELATEVAW 285
L +K S R A W +SN +G P P + L+A+ + +DEE+ T+ W
Sbjct: 185 LNEHAKLSMLRNATWTLSNFCRGKPQPN----FEQVKPALSALQRLIHSQDEEVLTDACW 240
Query: 286 VVVYLSALSDRGISLIVRSSV-PQLLIGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSV 344
+ YLS ++ I ++ S V P+L+ L + +LIP LR +GN++ DD V
Sbjct: 241 ALSYLSDGTNDKIQAVIESGVFPRLV--ELLMHPSASVLIPALRTVGNIVTGDDMQTQCV 298
Query: 345 LTVGHNIIDQALSGLIKCLKSDN-RVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIR 403
I QAL L+ L +++ + ++KE+ W +SNI AG+ E + + + L+
Sbjct: 299 ------IDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVH 352
Query: 404 LVTSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVD 463
L+ + +FDI++EAA+ + N T + +++LVA G + L+ D
Sbjct: 353 LLQTAEFDIKKEAAWAISNATSGGTHD------QIKYLVA---QGCIKPLCDLLVCPDPR 403
Query: 464 TAGLGLQFLELVMR----------GYPNKQGPKLVEMEDGIEAMERFQFHENEQMRNMAN 513
+ L+ LE +++ G N ++++ +G+E +E Q H+N ++ A
Sbjct: 404 IVTVCLEGLENILKVGEAEKNLGAGDVNSYA-QMIDDAEGLEKIENLQSHDNTEIYEKAV 462
Query: 514 GLVDEYFGED 523
+++ Y+ E+
Sbjct: 463 KMLESYWLEE 472
>Os07g0688300 Similar to Importin alpha 1
Length = 462
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 200/431 (46%), Gaps = 32/431 (7%)
Query: 109 KIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEP 168
++EA RRLLS + P V I+A +P +LS + +EAAW LTNIAA +
Sbjct: 19 QLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHPQLQMEAAWVLTNIAASDY 78
Query: 169 EETKSXXXXXXXXXXXXGEKSSTLVAEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTRL 227
+ E ++ + Q WA+GN+A + R +L GA+ P L +
Sbjct: 79 TLLVAECGAVPRLVELL-ESANANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLLAQF 137
Query: 228 MFSSKGSTARTAAWAMSNLIKGPDPKAANELITIDGVLNAIIASLEKEDEELATEVAWVV 287
K RTA WA+SNL G P + + +L+ I + DE++ + W +
Sbjct: 138 REGMKVPVLRTATWALSNLCFGKLPAE----VQVKPILDIISQLIHSVDEKILGDACWAL 193
Query: 288 VYLSALSDRGISLIVRS-SVPQLLIGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSVLT 346
Y+ GI ++ + + PQL+ + +S N +L+PV+ L + + DD V ++
Sbjct: 194 CYICDGVSDGIQHVLDAGACPQLVNLLMHASAN--ILLPVITVLARISSGDDAQVQVLV- 250
Query: 347 VGHNIIDQALSGLIKCLKSDNRVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVT 406
N I L+ L+ ++ + ++K++ +SNI+ GS ++ + + ++ LI L+
Sbjct: 251 --ENDILNYLAPLLA--RNYPKSIKKQACLIVSNISTGSKDNIQAVIDADVISPLIFLLK 306
Query: 407 SMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTAG 466
+ + DI+ EAA+ + N +G + + +V G L +++ D D
Sbjct: 307 TSEKDIKEEAAWAISN---AASGGSN------DQIQYLVSRGCLEPLCNVLTYQDADLVY 357
Query: 467 LGLQFLELVMR-GYPNKQG--------PKLVEMEDGIEAMERFQFHENEQMRNMANGLVD 517
L+ L+ +++ G KQG + + G++ +E Q +N+ + + L++
Sbjct: 358 ACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDKLEDLQEVDNDAIYKLVMKLLE 417
Query: 518 EYFGEDYGLDE 528
Y+ E+ D+
Sbjct: 418 GYWDEEVSDDD 428
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,081,854
Number of extensions: 568027
Number of successful extensions: 1630
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 6
Length of query: 528
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 423
Effective length of database: 11,553,331
Effective search space: 4887059013
Effective search space used: 4887059013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)