BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0640900 Os12g0640900|AK066694
(567 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0640900 Myosin II heavy chain-like family protein 910 0.0
Os02g0736100 Myosin II heavy chain-like family protein 630 0.0
Os06g0251700 Myosin II heavy chain-like family protein 582 e-166
Os03g0215700 Myosin II heavy chain-like family protein 278 9e-75
>Os12g0640900 Myosin II heavy chain-like family protein
Length = 567
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/567 (82%), Positives = 466/567 (82%)
Query: 1 MADPYGDXXXXXXXXXXXXXPALEVEDFINLLHGSDPVRVELTRLENELQYKEKELGEAQ 60
MADPYGD PALEVEDFINLLHGSDPVRVELTRLENELQYKEKELGEAQ
Sbjct: 1 MADPYGDGKGLKQQQRQKLKPALEVEDFINLLHGSDPVRVELTRLENELQYKEKELGEAQ 60
Query: 61 AEIKALRLSERAREKAVEDLTEELTKVDGXXXXXXXXXXXXXXXAKKINDEKKXXXXXXX 120
AEIKALRLSERAREKAVEDLTEELTKVDG AKKINDEKK
Sbjct: 61 AEIKALRLSERAREKAVEDLTEELTKVDGKLKLTESLLESKNLEAKKINDEKKAALAAQF 120
Query: 121 XXXXTLRRVHAAQKDDDMPPIEAILAPLEAELKLARHEIAKLQDDNRALDRLTKSKEAAL 180
TLRRVHAAQKDDDMPPIEAILAPLEAELKLARHEIAKLQDDNRALDRLTKSKEAAL
Sbjct: 121 AAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARHEIAKLQDDNRALDRLTKSKEAAL 180
Query: 181 LEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVR 240
LEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVR
Sbjct: 181 LEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVR 240
Query: 241 EXXXXXXXXXXXXXXXRDYQRKVQEMNEERKTLDRELXXXXXXXXXXXXXXXXEWKDGND 300
E RDYQRKVQEMNEERKTLDREL EWKDGND
Sbjct: 241 ELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVSANRVAVVVANEWKDGND 300
Query: 301 KVMPVKQWLEERRILQGEMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTTR 360
KVMPVKQWLEERRILQGEMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTTR
Sbjct: 301 KVMPVKQWLEERRILQGEMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTTR 360
Query: 361 TNVSAARRQSIGGADSLSKTNGFLSKRPSFQMRSSVSXXXXXLVNHAKGASKSFDGGCRS 420
TNVSAARRQSIGGADSLSKTNGFLSKRPSFQMRSSVS LVNHAKGASKSFDGGCRS
Sbjct: 361 TNVSAARRQSIGGADSLSKTNGFLSKRPSFQMRSSVSTTTTTLVNHAKGASKSFDGGCRS 420
Query: 421 LDRYKGHVNGSGMNVSTXXXXXXXXXXXXXXANEFTSVETEDTVSGLLYDTLQKEVIALR 480
LDRYKGHVNGSGMNVST ANEFTSVETEDTVSGLLYDTLQKEVIALR
Sbjct: 421 LDRYKGHVNGSGMNVSTDSSEDKESNNSDEKANEFTSVETEDTVSGLLYDTLQKEVIALR 480
Query: 481 KACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESEGKKRRXXXXXXXXXXXXLRLEKEQDN 540
KACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESEGKKRR LRLEKEQDN
Sbjct: 481 KACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESEGKKRRMEVAAMEKEMAALRLEKEQDN 540
Query: 541 KAKRFGSSSSQLPPGRTLPRSGSARNM 567
KAKRFGSSSSQLPPGRTLPRSGSARNM
Sbjct: 541 KAKRFGSSSSQLPPGRTLPRSGSARNM 567
>Os02g0736100 Myosin II heavy chain-like family protein
Length = 599
Score = 630 bits (1625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/574 (61%), Positives = 405/574 (70%), Gaps = 29/574 (5%)
Query: 21 PA-LEVEDFINLLHGSDPVRVELTRLENELQYKEKELGEAQAEIKALRLSERAREKAVED 79
PA L+ ++ + L+HGSDPV+VEL RLENE++ K++ELG+A AEIKALRLSERAREKAVE+
Sbjct: 27 PAGLDADELLTLMHGSDPVKVELNRLENEVRDKDRELGDAHAEIKALRLSERAREKAVEE 86
Query: 80 LTEELTKVDGXXXXXXXXXXXXXXXAKKINDEKKXXXXXXXXXXXTLRRVHAAQKDDDMP 139
LT E K+D KK NDEKK TLRRVHAAQKDDDMP
Sbjct: 87 LTAEYEKLDEKLKLTESLLESKNLELKKTNDEKKAAMAAQFAAEATLRRVHAAQKDDDMP 146
Query: 140 PIEAILAPLEAELKLARHEIAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDD 199
PIEAILAPLEAELKLAR EIAKLQDDNRALDRLTK KEAALLEAERTV+IALAKA++VDD
Sbjct: 147 PIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKQKEAALLEAERTVEIALAKAAMVDD 206
Query: 200 LQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVREXXXXXXXXXXXXXXXRDY 259
+QNKNQELMKQIEICQEENKILDR+HRQKVAEVEKL+QTVRE RDY
Sbjct: 207 MQNKNQELMKQIEICQEENKILDRLHRQKVAEVEKLSQTVRELEEAVLAGGAAANAVRDY 266
Query: 260 QRKVQEMNEERKTLDRELXXXXXXXXXXXXXXXXEWKDGNDKVMPVKQWLEERRILQGEM 319
QRKVQEMNEERK LDREL EWKD NDKVMPVKQWLEERR LQGEM
Sbjct: 267 QRKVQEMNEERKILDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEM 326
Query: 320 QQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTTRTN---------VSAARRQS 370
QQLRDKLAIAER ARSEAQLK+K+QLRLKVLE+GLR + ++ +RR S
Sbjct: 327 QQLRDKLAIAERTARSEAQLKEKYQLRLKVLEDGLRGPPSGSSRPTEGKSIGNGPSRRLS 386
Query: 371 IGGADSLSKT--NGFLSKR-PSFQMRSSVSXXXXXLVNHAKGASKSFDGGCRSLDRYKGH 427
+GGAD++SK NG L++R PSF RSS+S ++ HAKG S+SFDGG RSLDR G
Sbjct: 387 LGGADNMSKISPNGMLARRSPSFNSRSSLSTSSSLVIKHAKGTSRSFDGGTRSLDR--GK 444
Query: 428 VNGSG---MNVSTXXXXXXXXXXXXXXAN------EFTSVETEDTVSGLLYDTLQKEVIA 478
V G+G +N ST AN E T+ + DTVSG+LYD LQKEVI+
Sbjct: 445 VLGNGPHLLNRSTDAVRDCETTDDWKAANTEEKGSEATNSSSTDTVSGVLYDMLQKEVIS 504
Query: 479 LRKACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESEGKKRRXXXXXXXXXXXXLRLEKEQ 538
LRKACHEKDQSLKDKDDA+EMLAKKVDTLTKAME E KK R +RL+K+Q
Sbjct: 505 LRKACHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRLDKDQ 564
Query: 539 DNKAKRFGS-----SSSQLPPGRTLPRSGSARNM 567
+NKAKR G+ ++SQ P GR PR G RN+
Sbjct: 565 ENKAKRPGNFKGPGTTSQAPHGRNAPRGGLTRNL 598
>Os06g0251700 Myosin II heavy chain-like family protein
Length = 608
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 334/560 (59%), Positives = 391/560 (69%), Gaps = 35/560 (6%)
Query: 22 ALEVEDFINLLHGSDPVRVELTRLENELQYKEKELGEAQAEIKALRLSERAREKAVEDLT 81
+L+ ++FI L+HGSDPVRVELTRLENEL+ KE+ELGEAQ EI+ALRLSERAREKAVE+LT
Sbjct: 26 SLDADEFIALMHGSDPVRVELTRLENELRDKERELGEAQTEIRALRLSERAREKAVEELT 85
Query: 82 EELTKVDGXXXXXXXXXXXXXXXAKKINDEKKXXXXXXXXXXXTLRRVHAAQKDDDMPPI 141
+EL K+ KKINDEKK TLRRVHAAQKDDDMPPI
Sbjct: 86 DELEKMFEKLKLTESLLDSKNLEVKKINDEKKAAMAAQFAAEATLRRVHAAQKDDDMPPI 145
Query: 142 EAILAPLEAELKLARHEIAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQ 201
EAILAPLEAELKLAR EIAKLQDDNRALDRLTK KEAALL+AERTV+IA+AKA++VDDLQ
Sbjct: 146 EAILAPLEAELKLARQEIAKLQDDNRALDRLTKQKEAALLDAERTVEIAMAKAAMVDDLQ 205
Query: 202 NKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVREXXXXXXXXXXXXXXXRDYQR 261
NKNQELMKQIEIC EENKILD++ RQKVAEV+KL+ TV+E RDYQR
Sbjct: 206 NKNQELMKQIEICHEENKILDKLQRQKVAEVKKLSLTVKELEEAVLRGGATANVVRDYQR 265
Query: 262 KVQEMNEERKTLDRELXXXXXXXXXXXXXXXXEWKDGNDKVMPVKQWLEERRILQGEMQQ 321
+VQE+N+++KTL+ EL EWKD NDKVMPVKQWLEERR LQGEMQQ
Sbjct: 266 QVQEVNDQKKTLECELARAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQ 325
Query: 322 LRDKLAIAERAARSEAQLKDKFQLRLKVLEEGL--------RMSTTRTNVS--AARRQSI 371
LRDKLA+AER ARSEAQLK+K+QLRLKVLE+GL R+ T + S +RR S+
Sbjct: 326 LRDKLAVAERTARSEAQLKEKYQLRLKVLEDGLRGPPSGSSRLPTEGKSFSNGPSRRLSL 385
Query: 372 GGADSLSK--TNGFLSKR-PSFQMRSSVSXXXXXLVNHAKGASKSFDGGCRSLDRYKGHV 428
GGAD++SK NG L++R PSF RSS+S ++ HAKG SKSFDGG RSLDR K +
Sbjct: 386 GGADNMSKLSPNGLLARRSPSFHSRSSLSSSSSLVLKHAKGTSKSFDGGTRSLDRSK--I 443
Query: 429 NGSG---MNVSTXXXXXXXXXXXXXXANEFTSVETEDT-----------------VSGLL 468
NG+G +N ST + ++E ++ VSG L
Sbjct: 444 NGNGAHLLNRSTDAVRDCETNDSWKGNADEGTIENTNSNTDESNKETANNKSAEMVSGFL 503
Query: 469 YDTLQKEVIALRKACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESEGKKRRXXXXXXXXX 528
YD LQKEVI+LRKACHEKDQSLKDKDDA+EMLAKKVDTLTKAME E KK R
Sbjct: 504 YDMLQKEVISLRKACHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE 563
Query: 529 XXXLRLEKEQDNKAKRFGSS 548
+R++KEQ+ KA+R GSS
Sbjct: 564 VAAMRVDKEQEVKARRLGSS 583
>Os03g0215700 Myosin II heavy chain-like family protein
Length = 515
Score = 278 bits (711), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 237/381 (62%), Gaps = 10/381 (2%)
Query: 27 DFINLLHGSDPVRVELTRLENELQYKEKELGEAQAEIKALRLSERAREKAVEDLTEELTK 86
D + DPV EL RLEN L+ K++ELG A +EIK L+++E ++KA+ +LT+EL K
Sbjct: 15 DMLPFDGHPDPVVDELNRLENLLREKDRELGHAYSEIKGLKVTEALKDKAIAELTKELKK 74
Query: 87 VDGXXXXXXXXXXXXXXXAKKINDEKKXXXXXXXXXXXTLRRVHAAQKDDDMPPIEAILA 146
D K++++E+K TLRR+H++QKD+++ P +AI+A
Sbjct: 75 QDEKLSSLEKQLEQKNLDVKRLSNERKEALSAQFAAEATLRRIHSSQKDEEVVPFDAIIA 134
Query: 147 PLEAELKLARHEIAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQE 206
PLE+++K RHEIA LQDD +AL+R K KEAAL+EA ++ AL +A +V+D+QN+N E
Sbjct: 135 PLESDIKAYRHEIALLQDDKKALERHLKLKEAALVEAGNILRSALERALIVEDVQNQNIE 194
Query: 207 LMKQIEICQEENKILDRMHRQKVAEVEKLTQTVREXXXXXXXXXXXXXXXRDYQRKVQEM 266
L KQ+EI EENK+L++ +RQ+V ++E+LT T+ E R YQ + ++
Sbjct: 195 LKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANAVRFYQNQAAKL 254
Query: 267 NEERKTLDRELXXXXXXXXXXXXXXXXEWKDGNDKVMPVKQWLEERRILQGEMQQLRDKL 326
NEE++TL+REL EWKD DK+MPVK+WLEERR+LQGE+Q+LRDK+
Sbjct: 255 NEEKRTLERELARAKVYVNRVASTTANEWKDDADKLMPVKRWLEERRLLQGEIQRLRDKI 314
Query: 327 AIAERAARSEAQLKDKFQLRLKVLEEGLRMSTTRTNVS----------AARRQSIGGADS 376
A+AE++A++EAQL DK + +LK LE+ +R ++ T+ S +R S
Sbjct: 315 AMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNATSKQATPKRSSSQPRRP 374
Query: 377 LSKTNGFLSKRPSFQMRSSVS 397
+ +G +RP+ Q R+SVS
Sbjct: 375 IISADGADKRRPASQPRASVS 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,681,672
Number of extensions: 439985
Number of successful extensions: 1721
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1700
Number of HSP's successfully gapped: 4
Length of query: 567
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 461
Effective length of database: 11,501,117
Effective search space: 5302014937
Effective search space used: 5302014937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)