Os02g0736100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myosin II heavy chain-like family protein.
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Os02g0736100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myosin II heavy chain-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.22 | 0.267 | 8.37 | -0.0276 | 0.288 | -0.519 | 0.86 | -1.86 | -0.148 | 11.8 | 5.59 | 4382 | -- | -- |
| 36.17 | 0.28 | 8.38 | -0.341 | 0.283 | -0.533 | 1.13 | -- | -0.178 | 11.8 | 5.057 | 4369 | -- | -- |
| 33.39 | 0.269 | 8.36 | -0.0116 | 0.205 | -0.605 | -- | -2.3 | -0.15 | 9.14 | 3.999 | 4543 | -- | -- |
| 40.2 | 0.295 | 8.38 | -0.313 | 0.304 | -0.519 | -- | -- | -0.204 | 11.4 | 5.079 | 4362 | -- | -- |
| 35.48 | 0.277 | 8.35 | 0.051 | -- | -0.644 | -- | -2.49 | -0.132 | -- | 4.244 | 4562 | -- | -- |
| 42.39 | 0.305 | 8.36 | -0.315 | 0.31 | -- | 0.963 | -- | -0.1 | 11.7 | -- | -- | -- | -- |
| 46.36 | 0.319 | 8.36 | -0.277 | 0.307 | -- | -- | -- | -0.0967 | 11.3 | -- | -- | -- | -- |
| 42.87 | 0.305 | 8.4 | -0.266 | -- | -0.648 | -- | -- | -0.231 | -- | 4.909 | 4521 | -- | -- |
| 42.48 | 0.304 | 8.38 | -- | 0.3 | -0.59 | -- | -- | -0.19 | 11.5 | 7.54 | 4354 | -- | -- |
| 52.28 | 0.338 | 8.36 | -0.285 | -- | -- | -- | -- | -0.0997 | -- | -- | -- | -- | -- |
| 48.39 | 0.325 | 8.35 | -- | 0.31 | -- | -- | -- | -0.0659 | 11.4 | -- | -- | -- | -- |
| 43.47 | 0.307 | 8.39 | -- | -- | -0.781 | -- | -- | -0.213 | -- | 6.082 | 3054 | -- | -- |
| 54.42 | 0.344 | 8.36 | -- | -- | -- | -- | -- | -0.0681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 3 | 32.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 4 | 32.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 6 | 32.50 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 7 | 32.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 9 | 32.52 | radiation | 10 | 4320 | < th | dose dependent | rect. | 17 | 22 |
| 10 | 32.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 16 | 32.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 32 | 32.59 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 43 | 32.65 | radiation | 10 | 4320 | < th | dose dependent | rect. | 2 | 13 |
| 46 | 32.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 47 | 32.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 49 | 32.66 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 57 | 32.67 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 73 | 32.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 88 | 32.73 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 98 | 32.76 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 113 | 32.77 | radiation | 1 | 4320 | > th | dose independent | rect. | 8 | 22 |
| 124 | 32.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 147 | 32.81 | radiation | 10 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 153 | 32.81 | radiation | 10 | 4320 | < th | dose dependent | rect. | 9 | 23 |
| 154 | 32.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 178 | 32.84 | radiation | 10 | 4320 | < th | dose dependent | sin | 2 | NA |
| 186 | 32.85 | radiation | 1 | 4320 | > th | dose independent | rect. | 14 | 16 |
| 196 | 32.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 197 | 32.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 200 | 32.86 | radiation | 10 | 4320 | < th | dose dependent | no | NA | NA |
| 207 | 32.86 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 239 | 32.86 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 275 | 32.87 | radiation | 10 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 277 | 32.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 302 | 32.89 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 304 | 32.89 | temperature | 30 | 4320 | < th | dose dependent | sin | 3 | NA |
| 312 | 32.89 | radiation | 10 | 4320 | < th | dose dependent | rect. | 12 | 20 |
| 334 | 32.91 | radiation | 1 | 4320 | < th | dose independent | sin | 12 | NA |
| 349 | 32.91 | radiation | 10 | 4320 | < th | dose dependent | rect. | 14 | 23 |
| 356 | 32.93 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 364 | 32.94 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 375 | 32.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 385 | 32.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 401 | 32.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 440 | 32.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 468 | 33.00 | radiation | 10 | 4320 | < th | dose dependent | rect. | 14 | 17 |
| 488 | 33.03 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 532 | 33.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 546 | 33.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 554 | 33.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 576 | 33.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 591 | 33.08 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 631 | 33.09 | radiation | 1 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 653 | 33.10 | radiation | 1 | 14400 | < th | dose independent | sin | 15 | NA |
| 733 | 33.13 | radiation | 1 | 4320 | > th | dose independent | sin | 12 | NA |
| 764 | 33.14 | radiation | 1 | 14400 | > th | dose independent | sin | 15 | NA |
| 767 | 33.14 | radiation | 10 | 4320 | < th | dose dependent | sin | 13 | NA |
| 784 | 33.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 793 | 33.15 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 838 | 33.16 | radiation | 1 | 14400 | < th | dose dependent | sin | 15 | NA |
| 901 | 33.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 943 | 33.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 970 | 33.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 995 | 33.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 13 |