Os03g0215700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myosin II heavy chain-like family protein.
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Os03g0215700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myosin II heavy chain-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 516.82 | 1.07 | 5.66 | -4.36 | 1.55 | 2.33 | 0.901 | -9.3 | -0.927 | 23.6 | 16.13 | 352 | -- | -- |
| 579.32 | 1.12 | 5.46 | -2.81 | 1.43 | 2.31 | 1.31 | -- | -0.509 | 24 | -14.9 | 437 | -- | -- |
| 519.67 | 1.06 | 5.66 | -4.35 | 1.58 | 2.24 | -- | -9.23 | -0.917 | 23.5 | 16.37 | 329 | -- | -- |
| 585.26 | 1.13 | 5.47 | -2.82 | 1.36 | 2.14 | -- | -- | -0.495 | 23.3 | 4.148 | 503 | -- | -- |
| 636.38 | 1.17 | 5.61 | -4.15 | -- | 3.05 | -- | -6.06 | -0.913 | -- | -122.1 | 710 | -- | -- |
| 636.79 | 1.18 | 5.41 | -2.31 | 1.65 | -- | 0.569 | -- | -0.174 | 22.2 | -- | -- | -- | -- |
| 637.94 | 1.18 | 5.41 | -2.33 | 1.65 | -- | -- | -- | -0.174 | 22.1 | -- | -- | -- | -- |
| 662.14 | 1.2 | 5.47 | -3.09 | -- | 2.97 | -- | -- | -0.632 | -- | -122.8 | 784 | -- | -- |
| 772.32 | 1.29 | 5.37 | -- | 1.54 | 0.855 | -- | -- | -0.0152 | 22.5 | 2.734 | 413 | -- | -- |
| 802.12 | 1.32 | 5.37 | -2.31 | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
| 781.32 | 1.31 | 5.35 | -- | 1.64 | -- | -- | -- | 0.0854 | 22 | -- | -- | -- | -- |
| 887.16 | 1.39 | 5.36 | -- | -- | 1.79 | -- | -- | -0.139 | -- | -103.5 | 741 | -- | -- |
| 943.01 | 1.43 | 5.31 | -- | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 512.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 4 | 515.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 10 | 517.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 14 | 518.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 17 | 519.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 520.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 35 | 521.63 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 38 | 521.85 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 45 | 522.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 47 | 522.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 92 | 525.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 145 | 528.93 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 148 | 529.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 156 | 529.52 | temperature | 20 | 270 | > th | dose independent | sin | 22 | NA |
| 171 | 530.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 174 | 530.34 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 18 |
| 175 | 530.35 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 22 |
| 176 | 530.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 212 | 531.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 249 | 532.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 263 | 532.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 268 | 532.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 278 | 533.22 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 21 |
| 321 | 534.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 338 | 534.46 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 357 | 534.81 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 358 | 534.85 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 374 | 535.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 416 | 535.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 448 | 536.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 471 | 536.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 494 | 537.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 505 | 537.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 543 | 537.96 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 544 | 537.98 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 561 | 538.15 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 573 | 538.40 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 578 | 538.47 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 579 | 538.47 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 598 | 538.73 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 606 | 538.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 609 | 538.86 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 615 | 538.89 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 635 | 539.11 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 657 | 539.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 13 |
| 666 | 539.44 | temperature | 20 | 30 | > th | dose independent | sin | 19 | NA |
| 690 | 539.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 716 | 539.86 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 749 | 540.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 772 | 540.25 | radiation | 1 | 4320 | > th | dose independent | sin | 11 | NA |
| 842 | 540.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 848 | 540.70 | wind | 9 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 852 | 540.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 864 | 540.79 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 873 | 540.84 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 913 | 541.16 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 941 | 541.45 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 950 | 541.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 958 | 541.61 | radiation | 1 | 4320 | < th | dose independent | sin | 10 | NA |
| 964 | 541.65 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |