BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0215700 Os03g0215700|AK099772
(515 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0215700 Myosin II heavy chain-like family protein 972 0.0
Os12g0640900 Myosin II heavy chain-like family protein 323 2e-88
Os02g0736100 Myosin II heavy chain-like family protein 311 5e-85
Os06g0251700 Myosin II heavy chain-like family protein 307 1e-83
>Os03g0215700 Myosin II heavy chain-like family protein
Length = 515
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/515 (94%), Positives = 487/515 (94%)
Query: 1 MGSLGEVVEHGVSKDMLPFDGHPDPVVXXXXXXXXXXXXXXXXXGHAYSEIKGLKVTEAL 60
MGSLGEVVEHGVSKDMLPFDGHPDPVV GHAYSEIKGLKVTEAL
Sbjct: 1 MGSLGEVVEHGVSKDMLPFDGHPDPVVDELNRLENLLREKDRELGHAYSEIKGLKVTEAL 60
Query: 61 KDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEALSAQFAAEATLRRIHSS 120
KDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEALSAQFAAEATLRRIHSS
Sbjct: 61 KDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEALSAQFAAEATLRRIHSS 120
Query: 121 QKDEEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLKEAALVEAGNILRSALE 180
QKDEEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLKEAALVEAGNILRSALE
Sbjct: 121 QKDEEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLKEAALVEAGNILRSALE 180
Query: 181 RALIVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDV 240
RALIVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDV
Sbjct: 181 RALIVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDV 240
Query: 241 ANAVRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWKDDADKLMPVKRWLEER 300
ANAVRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWKDDADKLMPVKRWLEER
Sbjct: 241 ANAVRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWKDDADKLMPVKRWLEER 300
Query: 301 RLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNATSK 360
RLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNATSK
Sbjct: 301 RLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNATSK 360
Query: 361 QATXXXXXXXXXXXIISADGADKRRPASQPRASVSGKVLNKQPGSETEAAEKNRHAAAKR 420
QAT IISADGADKRRPASQPRASVSGKVLNKQPGSETEAAEKNRHAAAKR
Sbjct: 361 QATPKRSSSQPRRPIISADGADKRRPASQPRASVSGKVLNKQPGSETEAAEKNRHAAAKR 420
Query: 421 FDSPRSAKSVAAGGRGERPVRSHLWAHRSKVADDAGKENKEQNPNYKAHLGDSHADGDCG 480
FDSPRSAKSVAAGGRGERPVRSHLWAHRSKVADDAGKENKEQNPNYKAHLGDSHADGDCG
Sbjct: 421 FDSPRSAKSVAAGGRGERPVRSHLWAHRSKVADDAGKENKEQNPNYKAHLGDSHADGDCG 480
Query: 481 VQCSEHEEAMDLRKLDEGKADDSDAVKSTKDSCEI 515
VQCSEHEEAMDLRKLDEGKADDSDAVKSTKDSCEI
Sbjct: 481 VQCSEHEEAMDLRKLDEGKADDSDAVKSTKDSCEI 515
>Os12g0640900 Myosin II heavy chain-like family protein
Length = 567
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 195/428 (45%), Positives = 287/428 (67%), Gaps = 34/428 (7%)
Query: 45 GHAYSEIKGLKVTEALKDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEAL 104
G A +EIK L+++E ++KA+ +LT+EL K D KL E LE KNL+ K++++E+K AL
Sbjct: 57 GEAQAEIKALRLSERAREKAVEDLTEELTKVDGKLKLTESLLESKNLEAKKINDEKKAAL 116
Query: 105 SAQFAAEATLRRIHSSQKDEEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLK 164
+AQFAAEATLRR+H++QKD+++ P +AI+APLE+++K RHEIA LQDD +AL+R K K
Sbjct: 117 AAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARHEIAKLQDDNRALDRLTKSK 176
Query: 165 EAALVEAGNILRSALERALIVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLT 224
EAAL+EA ++ AL +A +V+D+QN+N EL KQ+EI EENK+L++ +RQ+V ++E+LT
Sbjct: 177 EAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLT 236
Query: 225 HTIAELEESILSTGDVANAVRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWK 284
T+ ELEE++L+ G ANAVR YQ + ++NEE++TL+RELARAKV NRVA ANEWK
Sbjct: 237 QTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVSANRVAVVVANEWK 296
Query: 285 DDADKLMPVKRWLEERRLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRN 344
D DK+MPVK+WLEERR+LQGE+Q+LRDK+A+AE++A++EAQL DK + +LK LE+ +R
Sbjct: 297 DGNDKVMPVKQWLEERRILQGEMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRM 356
Query: 345 ESSNTSASNKDNATSKQATXXXXXXXXXXXIISADGADKRRPASQPRASVS---GKVLNK 401
++ T+ S A +Q+ +S +RP+ Q R+SVS ++N
Sbjct: 357 STTRTNVS----AARRQSIGGADSLSKTNGFLS------KRPSFQMRSSVSTTTTTLVNH 406
Query: 402 QPGSETEAAEKNRHAAAKRFDSPRSAKSVAAGGRGERPVRSHLWAHRSKVADDAGKENKE 461
G A+K FD G R + H+ V+ D+ ++ +
Sbjct: 407 AKG------------ASKSFD---------GGCRSLDRYKGHVNGSGMNVSTDSSEDKES 445
Query: 462 QNPNYKAH 469
N + KA+
Sbjct: 446 NNSDEKAN 453
>Os02g0736100 Myosin II heavy chain-like family protein
Length = 599
Score = 311 bits (798), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 176/347 (50%), Positives = 250/347 (72%), Gaps = 1/347 (0%)
Query: 5 GEVVEHGVSKD-MLPFDGHPDPVVXXXXXXXXXXXXXXXXXGHAYSEIKGLKVTEALKDK 63
G V G+ D +L DPV G A++EIK L+++E ++K
Sbjct: 23 GAVQPAGLDADELLTLMHGSDPVKVELNRLENEVRDKDRELGDAHAEIKALRLSERAREK 82
Query: 64 AIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEALSAQFAAEATLRRIHSSQKD 123
A+ ELT E +K DEKL E LE KNL++K+ ++E+K A++AQFAAEATLRR+H++QKD
Sbjct: 83 AVEELTAEYEKLDEKLKLTESLLESKNLELKKTNDEKKAAMAAQFAAEATLRRVHAAQKD 142
Query: 124 EEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLKEAALVEAGNILRSALERAL 183
+++ P +AI+APLE+++K R EIA LQDD +AL+R K KEAAL+EA + AL +A
Sbjct: 143 DDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKQKEAALLEAERTVEIALAKAA 202
Query: 184 IVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANA 243
+V+D+QN+N EL KQ+EI EENK+L++ +RQ+V ++E+L+ T+ ELEE++L+ G ANA
Sbjct: 203 MVDDMQNKNQELMKQIEICQEENKILDRLHRQKVAEVEKLSQTVRELEEAVLAGGAAANA 262
Query: 244 VRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWKDDADKLMPVKRWLEERRLL 303
VR YQ + ++NEE++ L+RELARAKV NRVA ANEWKD DK+MPVK+WLEERR L
Sbjct: 263 VRDYQRKVQEMNEERKILDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFL 322
Query: 304 QGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTS 350
QGE+Q+LRDK+A+AE++A++EAQL +K + +LK LED +R S +S
Sbjct: 323 QGEMQQLRDKLAIAERTARSEAQLKEKYQLRLKVLEDGLRGPPSGSS 369
>Os06g0251700 Myosin II heavy chain-like family protein
Length = 608
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/306 (54%), Positives = 238/306 (77%)
Query: 45 GHAYSEIKGLKVTEALKDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERKEAL 104
G A +EI+ L+++E ++KA+ ELT EL+K EKL E L+ KNL+VK++++E+K A+
Sbjct: 61 GEAQTEIRALRLSERAREKAVEELTDELEKMFEKLKLTESLLDSKNLEVKKINDEKKAAM 120
Query: 105 SAQFAAEATLRRIHSSQKDEEVVPFDAIIAPLESDIKAYRHEIALLQDDKKALERHLKLK 164
+AQFAAEATLRR+H++QKD+++ P +AI+APLE+++K R EIA LQDD +AL+R K K
Sbjct: 121 AAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKQK 180
Query: 165 EAALVEAGNILRSALERALIVEDVQNQNIELKKQMEIYHEENKLLEKSNRQQVLDIERLT 224
EAAL++A + A+ +A +V+D+QN+N EL KQ+EI HEENK+L+K RQ+V ++++L+
Sbjct: 181 EAALLDAERTVEIAMAKAAMVDDLQNKNQELMKQIEICHEENKILDKLQRQKVAEVKKLS 240
Query: 225 HTIAELEESILSTGDVANAVRFYQNQAAKLNEEKRTLERELARAKVYVNRVASTTANEWK 284
T+ ELEE++L G AN VR YQ Q ++N++K+TLE ELARAKV NRVA ANEWK
Sbjct: 241 LTVKELEEAVLRGGATANVVRDYQRQVQEVNDQKKTLECELARAKVTANRVAVVVANEWK 300
Query: 285 DDADKLMPVKRWLEERRLLQGEIQRLRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRN 344
D DK+MPVK+WLEERR LQGE+Q+LRDK+A+AE++A++EAQL +K + +LK LED +R
Sbjct: 301 DSNDKVMPVKQWLEERRFLQGEMQQLRDKLAVAERTARSEAQLKEKYQLRLKVLEDGLRG 360
Query: 345 ESSNTS 350
S +S
Sbjct: 361 PPSGSS 366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.125 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,298,168
Number of extensions: 593393
Number of successful extensions: 3245
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3236
Number of HSP's successfully gapped: 4
Length of query: 515
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 410
Effective length of database: 11,553,331
Effective search space: 4736865710
Effective search space used: 4736865710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)