BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0626400 Os12g0626400|AK063967
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0626400 Similar to Phytoene synthase 1, chloroplast pr... 615 e-176
Os06g0729000 Phytoene synthase 1 (EC 2.5.1.32) 454 e-128
Os09g0555500 Similar to Phytoene synthase 1, chloroplast pr... 434 e-122
>Os12g0626400 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
(Fruit ripening specific protein pTOM5)
Length = 362
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 310/362 (85%), Positives = 310/362 (85%)
Query: 1 NPNHSTRAASPNPTSPRXXXXXXXXXXXXXXXXXXXXRQLHQDPRHLPPASPAEGEEAGR 60
NPNHSTRAASPNPTSPR RQLHQDPRHLPPASPAEGEEAGR
Sbjct: 1 NPNHSTRAASPNPTSPRAPDGVLLVGGGALDGGAPPPRQLHQDPRHLPPASPAEGEEAGR 60
Query: 61 RRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLMTPERRKAVWAIYVWCRRTDE 120
RRLV TQLMTPERRKAVWAIYVWCRRTDE
Sbjct: 61 RRLVGEAAAGREPGGGHGAGGRGVEEDGGGGGRLRGTQLMTPERRKAVWAIYVWCRRTDE 120
Query: 121 LVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMR 180
LVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMR
Sbjct: 121 LVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMR 180
Query: 181 LDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGIANQLT 240
LDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGIANQLT
Sbjct: 181 LDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGIANQLT 240
Query: 241 NILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAE 300
NILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAE
Sbjct: 241 NILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAE 300
Query: 301 KGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAYARAAV 360
KGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAYARAAV
Sbjct: 301 KGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAYARAAV 360
Query: 361 AS 362
AS
Sbjct: 361 AS 362
>Os06g0729000 Phytoene synthase 1 (EC 2.5.1.32)
Length = 420
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/262 (81%), Positives = 240/262 (91%)
Query: 97 TQLMTPERRKAVWAIYVWCRRTDELVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDA 156
T LMT +RR+A+WAIYVWCRRTDELVDGPN+S+ITP ALDRWEKRL+DLF GRPYDM DA
Sbjct: 147 TMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYDMLDA 206
Query: 157 ALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIA 216
ALSDT+SKFP+DIQPF+DMIEGMR DL K+RY++FDELY+YCYYVAGTVGLM+VPVMGIA
Sbjct: 207 ALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPVMGIA 266
Query: 217 PDSKASTESVYNAALALGIANQLTNILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGK 276
P+SKA+TESVY+AALALGIANQLTNILRDVGED+RRGRIYLP DELAEAGL++EDIF G
Sbjct: 267 PESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDIFNGV 326
Query: 277 VTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNF 336
VT+KWR FMK QI RAR+FF+EAE+GV L ASRWPV ASL LYRQILD IEANDYNNF
Sbjct: 327 VTNKWRSFMKRQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEIEANDYNNF 386
Query: 337 TKRAYVNKAKKLLSLPVAYARA 358
TKRAYV KAKKLL+LPVAY R+
Sbjct: 387 TKRAYVGKAKKLLALPVAYGRS 408
>Os09g0555500 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
(Fruit ripening specific protein pTOM5)
Length = 402
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/262 (77%), Positives = 234/262 (89%)
Query: 97 TQLMTPERRKAVWAIYVWCRRTDELVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDA 156
TQLMTPERR+A+WAIYVWCRRTDELVDGPN+S+++ ALDRWE RL+D+F GRPYDM DA
Sbjct: 125 TQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYDMLDA 184
Query: 157 ALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIA 216
ALS TV+ FPVDIQPF+DMIEGMRLDL KSRYRSFDELYLYCYYVAGTVGLMTVPVMGI+
Sbjct: 185 ALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIS 244
Query: 217 PDSKASTESVYNAALALGIANQLTNILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGK 276
PDS+A+TE+VY ALALG+ANQLTNILRDVGED+RRGRIYLP+DEL AGL+E+DIF G+
Sbjct: 245 PDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDIFDGR 304
Query: 277 VTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNF 336
VTD+WR FM+ QI RAR FF +AE+G + L+ SRWPV ASL LYRQILD IEANDYNNF
Sbjct: 305 VTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEANDYNNF 364
Query: 337 TKRAYVNKAKKLLSLPVAYARA 358
TKRAYV KAKK+++LP AY R+
Sbjct: 365 TKRAYVPKAKKIVALPKAYYRS 386
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,963,240
Number of extensions: 407280
Number of successful extensions: 852
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)