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Os06g0729000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phytoene synthase 1 (EC 2.5.1.32).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.2 (0.0205) R2 : 0.379
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.582 (0.0516) R2dC : 0.173 R2C : 0.101
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.543 (0.0432) R2dN8 : 0.278 R2N8 : 0.206
σ : 0.387
deviance : 68.52
__
_____
C
peak time of C : 3.32
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.29 0.32 14.2 -0.664 0.586 -0.24 0.826 -0.817 -0.665 3.11 -0.321 16470 -- --
47.12 0.32 14.2 -0.697 0.597 -0.367 0.735 -- -0.709 3.02 0.2841 16436 -- --
48.16 0.323 14.2 -0.66 0.578 -0.262 -- -0.918 -0.672 3.38 -0.2431 17008 -- --
48.88 0.326 14.2 -0.695 0.603 -0.375 -- -- -0.699 3.34 0.3593 17011 -- --
67.28 0.382 14.2 -0.631 -- -0.302 -- -0.979 -0.664 -- -0.3354 17012 -- --
50.42 0.333 14.2 -0.762 0.589 -- 0.81 -- -0.625 3.09 -- -- -- --
52.52 0.339 14.2 -0.779 0.597 -- -- -- -0.63 3.32 -- -- -- --
68.3 0.385 14.2 -0.665 -- -0.406 -- -- -0.704 -- 0.3086 17020 -- --
56.89 0.351 14.2 -- 0.594 -0.458 -- -- -0.659 3.34 1.011 32774 -- --
72.64 0.398 14.2 -0.754 -- -- -- -- -0.614 -- -- -- -- --
68.52 0.387 14.2 -- 0.582 -- -- -- -0.543 3.32 -- -- -- --
74.08 0.401 14.2 -- -- -0.618 -- -- -0.636 -- 0.5 30172 -- --
87.63 0.437 14.2 -- -- -- -- -- -0.531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.85 wind 1.0 270 < th dose independent rect. 13 13
3 44.09 wind 1.0 90 < th dose independent rect. 23 3
6 44.15 wind 1.0 270 < th dose independent rect. 10 16
20 44.46 wind 1.0 90 < th dose dependent rect. 23 3
38 44.79 wind 1.0 90 < th dose dependent rect. 13 13
41 44.86 humidity 80.0 43200 > th dose independent rect. 6 1
46 44.98 precipitation 0.1 43200 > th dose dependent rect. 18 2
52 45.09 humidity 80.0 43200 < th dose independent rect. 6 1
54 45.12 temperature 20.0 10 > th dose independent rect. 12 17
59 45.30 radiation 10.0 720 < th dose independent rect. 14 12
60 45.30 temperature 20.0 10 > th dose independent rect. 14 15
65 45.36 wind 1.0 270 < th dose independent sin 18 NA
67 45.36 precipitation 0.1 14400 > th dose independent rect. 3 14
68 45.37 precipitation 0.1 14400 < th dose independent rect. 3 14
69 45.37 humidity 80.0 14400 > th dose dependent rect. 13 1
70 45.37 precipitation 0.1 14400 < th dose dependent rect. 3 14
71 45.38 temperature 20.0 10 > th dose independent rect. 17 12
75 45.41 precipitation 0.1 14400 > th dose independent rect. 7 1
77 45.41 precipitation 0.1 14400 > th dose dependent rect. 7 1
85 45.44 wind 1.0 90 < th dose dependent rect. 17 9
91 45.45 precipitation 0.1 14400 > th dose dependent rect. 3 14
92 45.47 precipitation 0.1 14400 < th dose independent rect. 7 1
93 45.47 precipitation 0.1 14400 < th dose dependent rect. 7 1
97 45.49 radiation 10.0 720 < th dose independent rect. 14 4
105 45.52 precipitation 0.1 14400 > th dose independent sin 2 NA
111 45.53 wind 1.0 90 < th dose dependent rect. 9 17
112 45.54 precipitation 0.1 14400 < th dose independent sin 2 NA
116 45.54 precipitation 0.1 14400 < th dose dependent sin 2 NA
121 45.55 precipitation 0.1 14400 > th dose dependent sin 3 NA
135 45.60 precipitation 0.1 14400 > th dose independent rect. 6 11
142 45.61 humidity 90.0 14400 > th dose independent rect. 13 1
143 45.61 precipitation 0.1 14400 < th dose independent rect. 6 11
147 45.61 precipitation 0.1 14400 < th dose dependent rect. 6 11
149 45.62 precipitation 0.1 14400 > th dose dependent rect. 3 7
153 45.64 precipitation 0.1 14400 > th dose independent rect. 18 2
156 45.64 precipitation 0.1 14400 > th dose dependent rect. 6 11
163 45.66 precipitation 0.1 14400 < th dose independent rect. 18 2
166 45.66 precipitation 0.1 14400 < th dose dependent rect. 18 2
177 45.70 precipitation 0.1 14400 > th dose independent rect. 3 7
178 45.72 precipitation 0.1 14400 > th dose independent rect. 2 18
182 45.73 precipitation 0.1 14400 < th dose independent rect. 3 7
183 45.73 precipitation 0.1 14400 < th dose independent rect. 2 18
184 45.73 precipitation 0.1 14400 < th dose dependent rect. 3 7
186 45.73 precipitation 0.1 14400 < th dose dependent rect. 2 18
187 45.74 temperature 20.0 90 > th dose independent sin 13 NA
192 45.74 wind 3.0 43200 < th dose dependent rect. 4 4
221 45.81 radiation 10.0 720 < th dose independent rect. 16 1
223 45.81 precipitation 0.1 14400 > th dose independent rect. 23 21
224 45.81 precipitation 0.1 14400 < th dose independent rect. 23 21
227 45.81 precipitation 0.1 14400 < th dose dependent rect. 23 21
233 45.82 precipitation 0.1 14400 > th dose dependent rect. 16 1
240 45.84 humidity 80.0 14400 < th dose independent rect. 13 1
258 45.85 wind 5.0 43200 < th dose dependent rect. 7 1
261 45.86 precipitation 0.1 14400 > th dose independent rect. 9 8
287 45.88 precipitation 0.1 14400 > th dose dependent rect. 14 3
297 45.90 wind 1.0 14400 < th dose independent rect. 2 6
328 45.96 precipitation 0.1 14400 > th dose independent rect. 16 1
337 45.97 precipitation 0.1 14400 < th dose independent rect. 16 1
341 45.97 precipitation 0.1 14400 < th dose dependent rect. 16 1
342 45.97 humidity 90.0 14400 > th dose dependent rect. 7 2
344 45.97 wind 1.0 14400 < th dose dependent rect. 2 6
347 45.98 precipitation 0.1 14400 < th dose independent rect. 14 2
348 45.98 wind 3.0 43200 < th dose independent rect. 5 3
352 45.98 temperature 20.0 10 > th dose independent rect. 12 19
357 45.98 precipitation 0.1 14400 < th dose dependent rect. 14 2
363 45.99 precipitation 0.1 14400 > th dose independent rect. 14 2
387 46.01 precipitation 0.1 14400 > th dose dependent rect. 23 21
391 46.02 precipitation 0.1 14400 > th dose dependent rect. 2 18
407 46.04 wind 1.0 43200 > th dose dependent rect. 5 1
411 46.04 wind 1.0 43200 < th dose dependent rect. 2 11
415 46.05 wind 1.0 14400 > th dose independent rect. 2 6
421 46.06 precipitation 0.1 14400 < th dose independent rect. 11 6
432 46.06 precipitation 0.1 14400 < th dose dependent rect. 11 6
478 46.10 wind 1.0 43200 > th dose dependent rect. 5 3
481 46.10 precipitation 0.1 14400 > th dose dependent rect. 18 23
485 46.11 atmosphere 1005.0 720 > th dose independent rect. 21 2
495 46.11 precipitation 0.1 43200 > th dose dependent rect. 16 4
512 46.14 wind 3.0 43200 > th dose independent rect. 5 3
522 46.15 wind 1.0 14400 > th dose independent rect. 3 4
570 46.18 wind 1.0 43200 > th dose dependent rect. 7 1
643 46.25 precipitation 0.1 4320 > th dose dependent rect. 1 4
655 46.26 precipitation 0.1 4320 > th dose dependent rect. 23 9
659 46.27 atmosphere 1005.0 270 < th dose independent rect. 23 2
660 46.27 radiation 20.0 1440 < th dose independent rect. 11 2
668 46.27 precipitation 0.1 4320 > th dose dependent rect. 23 6
678 46.28 wind 1.0 14400 > th dose dependent rect. 23 3
686 46.29 precipitation 0.1 4320 < th dose independent rect. 23 9
687 46.29 precipitation 0.1 14400 > th dose independent rect. 9 11
688 46.29 precipitation 0.1 14400 < th dose independent rect. 9 11
694 46.29 precipitation 0.1 4320 < th dose dependent rect. 23 9
695 46.29 precipitation 0.1 14400 < th dose dependent rect. 9 11
701 46.30 precipitation 0.1 4320 < th dose independent rect. 23 7
710 46.30 precipitation 0.1 4320 < th dose dependent rect. 23 7
718 46.31 precipitation 0.1 4320 > th dose independent rect. 23 9
726 46.32 radiation 10.0 720 < th dose independent sin 17 NA
727 46.32 humidity 80.0 14400 > th dose independent rect. 10 1
729 46.32 temperature 20.0 10 > th dose independent rect. 1 4
735 46.32 precipitation 0.1 4320 > th dose dependent rect. 1 6
740 46.33 precipitation 0.1 4320 < th dose independent rect. 1 4
748 46.33 precipitation 0.1 4320 < th dose dependent rect. 1 4
754 46.34 precipitation 0.1 4320 > th dose independent rect. 1 4
756 46.34 temperature 20.0 270 > th dose independent rect. 21 7
758 46.34 wind 1.0 43200 > th dose independent rect. 23 8
760 46.34 precipitation 0.1 14400 > th dose independent rect. 11 9
761 46.34 precipitation 0.1 14400 < th dose independent rect. 11 9
771 46.34 precipitation 0.1 14400 < th dose dependent rect. 11 9
772 46.34 precipitation 0.1 14400 > th dose dependent rect. 18 19
792 46.36 wind 1.0 43200 < th dose independent rect. 23 6
801 46.36 humidity 90.0 14400 > th dose dependent rect. 7 7
803 46.37 humidity 80.0 14400 < th dose independent rect. 10 5
806 46.37 temperature 20.0 10 > th dose independent rect. 23 6
807 46.37 precipitation 0.1 14400 > th dose independent rect. 14 6
826 46.38 precipitation 0.1 14400 < th dose independent rect. 14 6
838 46.38 precipitation 0.1 14400 < th dose dependent rect. 14 6
850 46.39 wind 1.0 43200 < th dose independent rect. 23 9
855 46.39 precipitation 0.1 14400 < th dose independent rect. 18 23
866 46.39 precipitation 0.1 14400 < th dose dependent rect. 18 23
875 46.40 precipitation 0.1 14400 > th dose independent rect. 18 23
881 46.40 precipitation 0.1 14400 > th dose dependent rect. 18 16
891 46.41 precipitation 0.1 14400 > th dose independent rect. 2 22
939 46.44 humidity 80.0 14400 < th dose independent rect. 10 1
941 46.44 temperature 20.0 270 > th dose independent rect. 22 4
970 46.45 temperature 20.0 10 > th dose independent rect. 10 19
982 46.46 humidity 80.0 14400 < th dose independent rect. 10 7