BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0729000 Os06g0729000|AK070716
         (420 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17230.3  | chr5:5659839-5662087 REVERSE LENGTH=438            556   e-159

>AT5G17230.3 | chr5:5659839-5662087 REVERSE LENGTH=438
          Length = 437

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/372 (72%), Positives = 314/372 (84%), Gaps = 18/372 (4%)

Query: 65  RTSPVYSSLTVTPAGEAVISSEQKVYDVVLKQAALLKRHLRPQPHTIPIV-PKDLDLPRN 123
           R   V SSL  +P+GE  +SSE+KVY+VVLKQAAL+ + LR   + + +  P+D+ LP +
Sbjct: 65  RIGVVSSSLVASPSGEIALSSEEKVYNVVLKQAALVNKQLRSSSYDLDVKKPQDVVLPGS 124

Query: 124 G--LKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWAIYV---------------WCR 166
              L +AY RCGE+C EYAKTFYLGT+LMT +RR+AIWAIYV               WCR
Sbjct: 125 LSLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVMLKVDFYKQSIVALVWCR 184

Query: 167 RTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQPFRDMI 226
           RTDELVDGPNASHITP ALDRWE RL+DLF GRP+DMLDAAL+DT++++P+DIQPFRDMI
Sbjct: 185 RTDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDMI 244

Query: 227 EGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIA 286
           EGMR DL+K+RY+NFD+LY+YCYYVAGTVGLMSVPVMGI P+SKATTESVY+AALALGIA
Sbjct: 245 EGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGIA 304

Query: 287 NQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMFF 346
           NQLTNILRDVGEDARRGR+YLPQDELA+AGLSDEDIF G VT+KWR+FMK Q+KRARMFF
Sbjct: 305 NQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFF 364

Query: 347 EEAERGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKAKKLLALPVAYG 406
           +EAE+GVTELS ASRWPVWASLLLYR+ILDEIEANDYNNFTKRAYVGK KK+ ALP+AY 
Sbjct: 365 DEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYA 424

Query: 407 RSLLMPYSLRNS 418
           +S+L   S R S
Sbjct: 425 KSVLKTSSSRLS 436



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,029,396
Number of extensions: 383212
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 319
Effective length of database: 8,337,553
Effective search space: 2659679407
Effective search space used: 2659679407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)