BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0729000 Os06g0729000|AK070716
         (420 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0729000  Phytoene synthase 1 (EC 2.5.1.32)                   868   0.0  
Os09g0555500  Similar to Phytoene synthase 1, chloroplast pr...   498   e-141
Os12g0626400  Similar to Phytoene synthase 1, chloroplast pr...   454   e-128

>Os06g0729000 Phytoene synthase 1 (EC 2.5.1.32)
          Length = 420

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/420 (100%), Positives = 420/420 (100%)

Query: 1   MAAITLLRSASLPGLSDALARDAAAVQHVCSSYLPNNKEKKRRWILCSLKYACLGVDPAP 60
           MAAITLLRSASLPGLSDALARDAAAVQHVCSSYLPNNKEKKRRWILCSLKYACLGVDPAP
Sbjct: 1   MAAITLLRSASLPGLSDALARDAAAVQHVCSSYLPNNKEKKRRWILCSLKYACLGVDPAP 60

Query: 61  GEIARTSPVYSSLTVTPAGEAVISSEQKVYDVVLKQAALLKRHLRPQPHTIPIVPKDLDL 120
           GEIARTSPVYSSLTVTPAGEAVISSEQKVYDVVLKQAALLKRHLRPQPHTIPIVPKDLDL
Sbjct: 61  GEIARTSPVYSSLTVTPAGEAVISSEQKVYDVVLKQAALLKRHLRPQPHTIPIVPKDLDL 120

Query: 121 PRNGLKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHI 180
           PRNGLKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHI
Sbjct: 121 PRNGLKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHI 180

Query: 181 TPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKN 240
           TPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKN
Sbjct: 181 TPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKN 240

Query: 241 FDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDA 300
           FDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDA
Sbjct: 241 FDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDA 300

Query: 301 RRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQAS 360
           RRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQAS
Sbjct: 301 RRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQAS 360

Query: 361 RWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKAKKLLALPVAYGRSLLMPYSLRNSQK 420
           RWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKAKKLLALPVAYGRSLLMPYSLRNSQK
Sbjct: 361 RWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKAKKLLALPVAYGRSLLMPYSLRNSQK 420



>Os09g0555500 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
           (Fruit ripening specific protein pTOM5)
          Length = 402

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/335 (71%), Positives = 282/335 (84%), Gaps = 3/335 (0%)

Query: 83  ISSEQKVYDVVLKQAALLKRHLRPQPHTIPIVPKDLDLPRNGLKQAYHRCGEICEEYAKT 142
           + SEQ+V+DVVLKQAAL      P+    P    + +    GL  A+ RCGE+C+EYAKT
Sbjct: 64  VPSEQRVHDVVLKQAALAAAA--PEMRR-PAQLAERERVAGGLNAAFDRCGEVCKEYAKT 120

Query: 143 FYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYD 202
           FYL T LMT +RRRAIWAIYVWCRRTDELVDGPNASH++  ALDRWE RLDD+F GRPYD
Sbjct: 121 FYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYD 180

Query: 203 MLDAALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPV 262
           MLDAALS T++ FP+DIQPFRDMIEGMR DL K+RY++FDELY+YCYYVAGTVGLM+VPV
Sbjct: 181 MLDAALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPV 240

Query: 263 MGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDI 322
           MGI+P+S+A TE+VY  ALALG+ANQLTNILRDVGEDARRGRIYLP DEL  AGLS++DI
Sbjct: 241 MGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDI 300

Query: 323 FNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEIEAND 382
           F+G VT++WR FM+ QI RAR FF +AE G +EL+Q SRWPVWASLLLYRQILDEIEAND
Sbjct: 301 FDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEAND 360

Query: 383 YNNFTKRAYVGKAKKLLALPVAYGRSLLMPYSLRN 417
           YNNFTKRAYV KAKK++ALP AY RSL++P S+R+
Sbjct: 361 YNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRH 395



>Os12g0626400 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
           (Fruit ripening specific protein pTOM5)
          Length = 362

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 240/262 (91%)

Query: 147 TMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYDMLDA 206
           T LMT +RR+A+WAIYVWCRRTDELVDGPN+S+ITP ALDRWEKRL+DLF GRPYDM DA
Sbjct: 97  TQLMTPERRKAVWAIYVWCRRTDELVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDA 156

Query: 207 ALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPVMGIA 266
           ALSDT+SKFP+DIQPF+DMIEGMR DL K+RY++FDELY+YCYYVAGTVGLM+VPVMGIA
Sbjct: 157 ALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIA 216

Query: 267 PESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDIFNGV 326
           P+SKA+TESVY+AALALGIANQLTNILRDVGED+RRGRIYLP DELAEAGL++EDIF G 
Sbjct: 217 PDSKASTESVYNAALALGIANQLTNILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGK 276

Query: 327 VTNKWRSFMKRQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEIEANDYNNF 386
           VT+KWR FMK QI RAR+FF+EAE+GV  L  ASRWPV ASL LYRQILD IEANDYNNF
Sbjct: 277 VTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNF 336

Query: 387 TKRAYVGKAKKLLALPVAYGRS 408
           TKRAYV KAKKLL+LPVAY R+
Sbjct: 337 TKRAYVNKAKKLLSLPVAYARA 358



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,204,484
Number of extensions: 604940
Number of successful extensions: 1211
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 3
Length of query: 420
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 317
Effective length of database: 11,657,759
Effective search space: 3695509603
Effective search space used: 3695509603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)