Os09g0555500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5).
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Os09g0555500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.21 | 0.655 | 9.72 | 0.966 | 2.72 | 1.52 | -1.04 | 0.0793 | 0.5 | 9.17 | 79 | 793 | -- | -- |
| 194.14 | 0.649 | 9.72 | 0.964 | 2.71 | 1.52 | -1.06 | -- | 0.503 | 9.19 | 79 | 800 | -- | -- |
| 196.57 | 0.653 | 9.72 | 0.989 | 2.69 | 1.52 | -- | 0.925 | 0.505 | 9.2 | 78.97 | 817 | -- | -- |
| 196.23 | 0.652 | 9.73 | 0.926 | 2.63 | 1.72 | -- | -- | 0.463 | 9.46 | 77 | 925 | -- | -- |
| 417.1 | 0.956 | 9.79 | 0.953 | -- | 0.564 | -- | -0.536 | 0.549 | -- | 78.97 | 817 | -- | -- |
| 237.38 | 0.722 | 9.74 | 1.07 | 1.9 | -- | -1.09 | -- | 0.528 | 9.4 | -- | -- | -- | -- |
| 241.63 | 0.728 | 9.74 | 1.03 | 1.91 | -- | -- | -- | 0.525 | 9.35 | -- | -- | -- | -- |
| 418.94 | 0.957 | 9.79 | 0.969 | -- | 0.56 | -- | -- | 0.554 | -- | 78.97 | 817 | -- | -- |
| 215.4 | 0.684 | 9.76 | -- | 2.69 | 1.77 | -- | -- | 0.342 | 9.41 | 76 | 931 | -- | -- |
| 453.91 | 0.996 | 9.79 | 1.02 | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
| 269.53 | 0.768 | 9.77 | -- | 1.91 | -- | -- | -- | 0.411 | 9.31 | -- | -- | -- | -- |
| 443.68 | 0.984 | 9.81 | -- | -- | 0.581 | -- | -- | 0.447 | -- | 78.97 | 817 | -- | -- |
| 481.31 | 1.02 | 9.82 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.38 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 3 | 189.65 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 17 |
| 28 | 192.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 44 | 193.98 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 47 | 194.09 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |
| 52 | 194.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 60 | 194.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 61 | 194.80 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 72 | 195.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 80 | 195.39 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 17 |
| 83 | 195.49 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 89 | 195.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 100 | 195.96 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 101 | 195.97 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 9 |
| 103 | 195.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 117 | 196.24 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 21 |
| 120 | 196.37 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 22 |
| 149 | 196.92 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 19 |
| 157 | 196.97 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 191 | 197.52 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 217 | 197.91 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 222 | 197.97 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 23 |
| 224 | 197.99 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 226 | 198.01 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 237 | 198.09 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 22 |
| 257 | 198.28 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 262 | 198.32 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 263 | 198.33 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 23 |
| 286 | 198.55 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 333 | 198.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 343 | 199.00 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 15 |
| 348 | 199.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 356 | 199.14 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 14 |
| 388 | 199.36 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 412 | 199.55 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 439 | 199.75 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 23 |
| 445 | 199.77 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 464 | 199.84 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 474 | 199.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 517 | 200.24 | humidity | 90 | 720 | < th | dose independent | rect. | 18 | 7 |
| 525 | 200.31 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 542 | 200.44 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 4 |
| 544 | 200.44 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 578 | 200.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 584 | 200.66 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 614 | 200.77 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 1 |
| 649 | 200.98 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 23 |
| 729 | 201.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 751 | 201.57 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 758 | 201.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 759 | 201.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 766 | 201.65 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 3 |
| 802 | 201.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 806 | 201.79 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 807 | 201.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 808 | 201.80 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 813 | 201.82 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 820 | 201.86 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 933 | 202.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 971 | 202.60 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 991 | 202.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 9 |