BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0555500 Os09g0555500|AK108154
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0555500 Similar to Phytoene synthase 1, chloroplast pr... 715 0.0
Os06g0729000 Phytoene synthase 1 (EC 2.5.1.32) 498 e-141
Os12g0626400 Similar to Phytoene synthase 1, chloroplast pr... 434 e-122
>Os09g0555500 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
(Fruit ripening specific protein pTOM5)
Length = 402
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/402 (88%), Positives = 355/402 (88%)
Query: 1 MAXXXXXXCSVRAAGSNPIGCLEVAEPWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MA CSVRAAGSNPIGCLEVAEPWS
Sbjct: 1 MAPPPPPPCSVRAAGSNPIGCLEVAEPWSGAAPPPLPPLPGHLHVAAPAAEDDDDALAAA 60
Query: 61 XXXVPSEQRVHDVVLKQXXXXXXXPEMRRPAQLAERERVAGGLNAAFDRCGEVCKEYAKT 120
VPSEQRVHDVVLKQ PEMRRPAQLAERERVAGGLNAAFDRCGEVCKEYAKT
Sbjct: 61 AAAVPSEQRVHDVVLKQAALAAAAPEMRRPAQLAERERVAGGLNAAFDRCGEVCKEYAKT 120
Query: 121 FYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYD 180
FYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYD
Sbjct: 121 FYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYD 180
Query: 181 MLDAALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPV 240
MLDAALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPV
Sbjct: 181 MLDAALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPV 240
Query: 241 MGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDI 300
MGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDI
Sbjct: 241 MGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDI 300
Query: 301 FDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEAND 360
FDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEAND
Sbjct: 301 FDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEAND 360
Query: 361 YNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRHCSSLTSS 402
YNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRHCSSLTSS
Sbjct: 361 YNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRHCSSLTSS 402
>Os06g0729000 Phytoene synthase 1 (EC 2.5.1.32)
Length = 420
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/335 (71%), Positives = 279/335 (83%), Gaps = 3/335 (0%)
Query: 64 VPSEQRVHDVVLKQXXXXXXX--PEMRR-PAQLAERERVAGGLNAAFDRCGEVCKEYAKT 120
+ SEQ+V+DVVLKQ P+ P + + GL A+ RCGE+C+EYAKT
Sbjct: 83 ISSEQKVYDVVLKQAALLKRHLRPQPHTIPIVPKDLDLPRNGLKQAYHRCGEICEEYAKT 142
Query: 121 FYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYD 180
FYL T LMT +RRRAIWAIYVWCRRTDELVDGPNASH++ ALDRWE RLDD+F GRPYD
Sbjct: 143 FYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYD 202
Query: 181 MLDAALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPV 240
MLDAALS T++ FP+DIQPFRDMIEGMR DL K+RY++FDELY+YCYYVAGTVGLM+VPV
Sbjct: 203 MLDAALSDTISKFPIDIQPFRDMIEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPV 262
Query: 241 MGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDI 300
MGI+P+S+A TE+VY ALALG+ANQLTNILRDVGEDARRGRIYLP DEL AGLS++DI
Sbjct: 263 MGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDI 322
Query: 301 FDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEAND 360
F+G VT++WR FM+ QI RAR FF +AE G +EL+Q SRWPVWASLLLYRQILDEIEAND
Sbjct: 323 FNGVVTNKWRSFMKRQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEIEAND 382
Query: 361 YNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRH 395
YNNFTKRAYV KAKK++ALP AY RSL++P S+R+
Sbjct: 383 YNNFTKRAYVGKAKKLLALPVAYGRSLLMPYSLRN 417
>Os12g0626400 Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-)
(Fruit ripening specific protein pTOM5)
Length = 362
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/262 (77%), Positives = 234/262 (89%)
Query: 125 TQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYDMLDA 184
TQLMTPERR+A+WAIYVWCRRTDELVDGPN+S+++ ALDRWE RL+D+F GRPYDM DA
Sbjct: 97 TQLMTPERRKAVWAIYVWCRRTDELVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDA 156
Query: 185 ALSHTVATFPVDIQPFRDMIEGMRLDLTKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIS 244
ALS TV+ FPVDIQPF+DMIEGMRLDL KSRYRSFDELYLYCYYVAGTVGLMTVPVMGI+
Sbjct: 157 ALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIA 216
Query: 245 PDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDIFDGR 304
PDS+A+TE+VY ALALG+ANQLTNILRDVGED+RRGRIYLP+DEL AGL+E+DIF G+
Sbjct: 217 PDSKASTESVYNAALALGIANQLTNILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGK 276
Query: 305 VTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEANDYNNF 364
VTD+WR FM+ QI RAR FF +AE+G + L+ SRWPV ASL LYRQILD IEANDYNNF
Sbjct: 277 VTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNF 336
Query: 365 TKRAYVPKAKKIVALPKAYYRS 386
TKRAYV KAKK+++LP AY R+
Sbjct: 337 TKRAYVNKAKKLLSLPVAYARA 358
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,579,021
Number of extensions: 438738
Number of successful extensions: 804
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)