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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0626400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytoene synthase 1, chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.041) R2 : 0.813
β1 : -1.32 (0.15) R2dD : 0.0329 R2D : 0.00618
β2 : 5.3 (0.127) R2dC : 1.02 R2C : 0.379
β3 : -2.66 (0.119) R2dE : 0.295 R2E : -0.306
β4 : 5.15 (0.543) R2dD*C : 0.0467 R2D*C : 0.0145
β5 : -2.3 (0.427) R2dD*E : 0.0151 R2D*E : -0.0217
γ1 : -1.03 (0.0875) R2dN8 : 0.0769 R2N8 : 0.0376
σ : 0.772
deviance : 270
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_____
C
peak time of C : 5.05
E
wheather : humidity
threshold : 47.86
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 20

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270 0.772 13.8 -1.32 5.3 -2.66 5.15 -2.3 -1.03 5.05 47.86 10 14 20
289.52 0.792 13.8 -1.35 5.3 -2.68 4.86 -- -1.06 5.14 49.16 14 13.9 20
322.02 0.836 13.9 -1.33 5.28 -2.61 -- -0.476 -1.03 5.04 44.58 9 14 20
322.87 0.837 13.9 -1.29 5.21 -2.54 -- -- -1.04 5.09 44.9 9 14 20
924.28 1.42 14 -1.27 -- -2.52 -- -1.72 -1.31 -- -8.093 18 9.96 16.8
388.13 0.924 13.8 -1.4 4.18 -- 3.9 -- -1.08 6.7 -- -- -- --
426.67 0.967 13.8 -1.34 4.19 -- -- -- -1.09 6.67 -- -- -- --
887.76 1.39 14 -1.16 -- -2.54 -- -- -1.21 -- -15.52 15 9.95 16.8
366.51 0.892 13.8 -- 5.18 -2.65 -- -- -0.883 5.02 43.42 10 14 20
1343.93 1.71 13.9 -1.24 -- -- -- -- -1 -- -- -- -- --
473.72 1.02 13.8 -- 4.18 -- -- -- -0.939 6.69 -- -- -- --
481.79 1.02 14 -- -- 4.9 -- -- -0.878 -- -2.766 419 18.8 17
1384.37 1.74 13.9 -- -- -- -- -- -0.867 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 272.97 humidity 50.0 10 > th dose dependent rect. 14 20
9 281.96 humidity 60.0 270 > th dose independent rect. 14 3
17 284.16 humidity 60.0 270 > th dose independent rect. 13 5
20 285.56 humidity 50.0 10 > th dose dependent rect. 14 6
26 287.26 humidity 60.0 270 > th dose independent rect. 13 19
28 288.02 humidity 50.0 90 > th dose dependent rect. 13 7
30 288.44 temperature 30.0 270 < th dose independent rect. 14 3
65 293.99 temperature 30.0 90 < th dose independent rect. 14 6
83 295.55 temperature 30.0 90 < th dose independent rect. 15 18
85 295.67 humidity 70.0 10 > th dose independent rect. 13 7
111 297.62 humidity 50.0 270 > th dose dependent rect. 15 2
246 307.69 atmosphere 1005.0 270 > th dose independent rect. 15 2
260 308.87 humidity 50.0 270 > th dose dependent rect. 1 17
273 309.21 humidity 50.0 270 > th dose independent rect. 3 15
307 311.22 atmosphere 1005.0 270 > th dose independent rect. 14 4
337 313.09 humidity 50.0 270 > th dose dependent rect. 23 20
350 313.46 humidity 50.0 90 > th dose dependent rect. 5 15
362 313.92 humidity 50.0 10 > th dose dependent rect. 5 15
385 314.72 humidity 50.0 10 > th dose dependent rect. 3 17
398 315.05 humidity 70.0 10 > th dose independent rect. 3 17
423 315.82 radiation 1.0 90 < th dose independent rect. 5 14
425 315.95 wind 3.0 14400 < th dose dependent rect. 21 7
428 316.05 precipitation 0.1 4320 > th dose dependent rect. 12 5
456 316.90 humidity 60.0 10 > th dose dependent rect. 7 13
460 317.07 wind 3.0 14400 < th dose dependent rect. 20 9
475 317.40 precipitation 0.1 4320 < th dose independent rect. 12 5
476 317.40 precipitation 0.1 4320 < th dose dependent rect. 12 5
484 317.52 wind 3.0 14400 < th dose dependent rect. 1 2
488 317.60 humidity 60.0 10 > th dose dependent rect. 1 19
490 317.67 radiation 1.0 90 < th dose dependent rect. 5 14
496 317.80 precipitation 0.1 4320 > th dose dependent rect. 9 8
503 317.93 humidity 70.0 10 > th dose independent rect. 5 15
527 318.34 precipitation 0.1 270 < th dose independent rect. 16 23
528 318.34 precipitation 0.1 270 < th dose dependent rect. 16 23
546 318.60 atmosphere 995.0 270 > th dose independent rect. 13 19
547 318.62 radiation 30.0 270 < th dose independent rect. 14 3
564 318.95 precipitation 0.1 4320 > th dose independent rect. 12 5
572 319.17 precipitation 0.1 4320 > th dose dependent rect. 16 1
578 319.32 radiation 1.0 90 < th dose independent rect. 7 12
583 319.37 humidity 80.0 1440 < th dose independent rect. 10 4
596 319.57 humidity 80.0 1440 < th dose independent rect. 11 1
615 320.00 wind 1.0 14400 < th dose independent rect. 19 11
645 320.51 humidity 90.0 10 < th dose dependent rect. 10 19
646 320.53 wind 3.0 14400 < th dose independent rect. 20 6
662 320.72 wind 1.0 14400 < th dose independent rect. 21 9
668 320.80 radiation 40.0 270 < th dose independent rect. 13 19
670 320.93 wind 1.0 14400 > th dose independent rect. 21 9
676 321.05 atmosphere 995.0 90 > th dose dependent rect. 14 6
687 321.16 wind 1.0 14400 > th dose independent rect. 19 11
716 321.49 atmosphere 1015.0 270 < th dose independent rect. 13 19
728 321.66 radiation 30.0 270 < th dose independent rect. 15 1
731 321.67 humidity 80.0 1440 > th dose independent rect. 10 4
737 321.71 humidity 80.0 1440 > th dose independent rect. 11 1
746 321.78 radiation 40.0 90 < th dose dependent rect. 13 21
750 321.87 humidity 70.0 10 > th dose dependent sin 23 NA
752 321.89 radiation 10.0 10 < th dose dependent sin 22 NA
759 321.95 radiation 1.0 270 > th dose independent rect. 8 5
762 321.98 radiation 40.0 270 < th dose dependent rect. 15 2
766 322.01 precipitation 0.1 4320 > th dose independent rect. 16 1
774 322.10 wind 3.0 14400 > th dose independent rect. 20 6
790 322.29 humidity 90.0 270 < th dose dependent rect. 17 21
792 322.32 atmosphere 995.0 270 > th dose independent rect. 12 21
793 322.33 precipitation 0.1 4320 < th dose independent rect. 16 1
794 322.33 precipitation 0.1 4320 < th dose dependent rect. 16 1
807 322.49 radiation 1.0 270 > th dose independent rect. 7 7
830 322.65 atmosphere 995.0 10 > th dose independent rect. 14 20
855 322.93 wind 9.0 270 < th dose independent rect. 13 19
900 323.31 precipitation 0.1 270 < th dose independent rect. 8 15
901 323.31 precipitation 0.1 270 < th dose dependent rect. 8 15
910 323.47 humidity 70.0 1440 > th dose dependent rect. 11 1
916 323.54 humidity 80.0 10 < th dose independent rect. 10 6
937 323.70 radiation 1.0 90 < th dose independent rect. 11 8
939 323.71 radiation 10.0 10 > th dose independent rect. 10 21
948 323.77 temperature 10.0 270 > th dose independent rect. 8 5
949 323.77 atmosphere 995.0 270 > th dose independent rect. 8 5
950 323.77 atmosphere 1015.0 270 < th dose independent rect. 8 5
951 323.77 temperature 10.0 270 > th dose independent rect. 13 19
955 323.82 precipitation 0.1 270 < th dose independent rect. 8 5
956 323.82 precipitation 0.1 270 < th dose dependent rect. 8 5
967 323.88 radiation 10.0 10 > th dose independent rect. 10 8
996 324.01 humidity 90.0 270 < th dose independent rect. 17 21