BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0626400 Os12g0626400|AK063967
         (362 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17230.3  | chr5:5659839-5662087 REVERSE LENGTH=438            443   e-125

>AT5G17230.3 | chr5:5659839-5662087 REVERSE LENGTH=438
          Length = 437

 Score =  443 bits (1139), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/281 (75%), Positives = 242/281 (86%), Gaps = 15/281 (5%)

Query: 97  TQLMTPERRKAVWAIYV---------------WCRRTDELVDGPNSSYITPKALDRWEKR 141
           T LMTPERRKA+WAIYV               WCRRTDELVDGPN+S+ITP ALDRWE R
Sbjct: 150 TLLMTPERRKAIWAIYVMLKVDFYKQSIVALVWCRRTDELVDGPNASHITPMALDRWEAR 209

Query: 142 LEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRSFDELYLYCYYV 201
           LEDLF GRP+DM DAAL+DTV+++PVDIQPF+DMIEGMR+DL KSRY++FD+LYLYCYYV
Sbjct: 210 LEDLFRGRPFDMLDAALADTVARYPVDIQPFRDMIEGMRMDLKKSRYQNFDDLYLYCYYV 269

Query: 202 AGTVGLMTVPVMGIAPDSKASTESVYNAALALGIANQLTNILRDVGEDSRRGRIYLPLDE 261
           AGTVGLM+VPVMGI P SKA+TESVYNAALALGIANQLTNILRDVGED+RRGR+YLP DE
Sbjct: 270 AGTVGLMSVPVMGIDPKSKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDE 329

Query: 262 LAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLWLY 321
           LA+AGL++EDIF GKVTDKWR FMK Q+ RAR+FFDEAEKGV  L +ASRWPV ASL LY
Sbjct: 330 LAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLY 389

Query: 322 RQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAYARAAVAS 362
           R+ILD IEANDYNNFTKRAYV K KK+ +LP+AYA++ + +
Sbjct: 390 RRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKSVLKT 430



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,820,129
Number of extensions: 253295
Number of successful extensions: 517
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,364,969
Effective search space: 2191621878
Effective search space used: 2191621878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)