BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0620600 Os12g0620600|AK119567
(753 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0620600 Conserved hypothetical protein 1184 0.0
Os01g0194000 Conserved hypothetical protein 267 3e-71
Os03g0649000 Conserved hypothetical protein 72 1e-12
>Os12g0620600 Conserved hypothetical protein
Length = 753
Score = 1184 bits (3064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/753 (80%), Positives = 603/753 (80%)
Query: 1 MVARMWPWPPPARKFRVRLVVRRAEGLXXXXXXXXXXXPVAEAKVAVEVRWKGPKASPLG 60
MVARMWPWPPPARKFRVRLVVRRAEGL PVAEAKVAVEVRWKGPKASPLG
Sbjct: 1 MVARMWPWPPPARKFRVRLVVRRAEGLTATATATASSSPVAEAKVAVEVRWKGPKASPLG 60
Query: 61 SLRRVMHSNRTRLESXXXXXXXXXXXXXXXXXXXXTSHRKSGAAFHPWDLAFSVFVNDSN 120
SLRRVMHSNRTRLES TSHRKSGAAFHPWDLAFSVFVNDSN
Sbjct: 61 SLRRVMHSNRTRLESAAEAAVAWEEEFERVETFTATSHRKSGAAFHPWDLAFSVFVNDSN 120
Query: 121 KGPKGELILGTASLNLAEYTSASEEVEIILXXXXXXXXXXXXXXXXXXXXXVELGPPHQS 180
KGPKGELILGTASLNLAEYTSASEEVEIIL VELGPPHQS
Sbjct: 121 KGPKGELILGTASLNLAEYTSASEEVEIILPLSVPNGSSESSPSLHLTLSLVELGPPHQS 180
Query: 181 PDASQRSAVTAXXXXXXXXXXXXXKDEVSSVIKAGLRNLKILTDLVSTRRSKKTNRDDDG 240
PDASQRSAVTA KDEVSSVIKAGLRNLKILTDLVSTRRSKKTNRDDDG
Sbjct: 181 PDASQRSAVTAPLSPSSGDSVPSSKDEVSSVIKAGLRNLKILTDLVSTRRSKKTNRDDDG 240
Query: 241 SEDKCYVHSDGAEYPXXXXXXXXXXXXXXXXXXXXXXTVRKSFSYGSLQSVNYAGGLLYA 300
SEDKCYVHSDGAEYP TVRKSFSYGSLQSVNYAGGLLYA
Sbjct: 241 SEDKCYVHSDGAEYPSDTDSLDEDLDDRERDDGLGGSTVRKSFSYGSLQSVNYAGGLLYA 300
Query: 301 HARIDGEHEDWIYYSHRKSEAGYSVEQEASSTAEEPVVSVSRRSXXXXXXXXXXXXXXXX 360
HARIDGEHEDWIYYSHRKSEAGYSVEQEASSTAEEPVVSVSRRS
Sbjct: 301 HARIDGEHEDWIYYSHRKSEAGYSVEQEASSTAEEPVVSVSRRSLLPWKKKRKLNLRLLK 360
Query: 361 XXXXXGEPLLKKGNDEEGGDDIDYDRRLLTTSDGNALEGSDSSINSMVSIFGDDNFVVGN 420
GEPLLKKGNDEEGGDDIDYDRRLLTTSDGNALEGSDSSINSMVSIFGDDNFVVGN
Sbjct: 361 VLKNKGEPLLKKGNDEEGGDDIDYDRRLLTTSDGNALEGSDSSINSMVSIFGDDNFVVGN 420
Query: 421 WESKEVLSRDGHLRLSTQVFFASIDQRSERAAGESACTALVAVIADWFEANQDLMPIRSQ 480
WESKEVLSRDGHLRLSTQVFFASIDQRSERAAGESACTALVAVIADWFEANQDLMPIRSQ
Sbjct: 421 WESKEVLSRDGHLRLSTQVFFASIDQRSERAAGESACTALVAVIADWFEANQDLMPIRSQ 480
Query: 481 FDSLIREGSLEWRKLCENETYRERFPDKHFDLETVLHAKIRPLTVSPNRSFIGFFQPEST 540
FDSLIREGSLEWRKLCENETYRERFPDKHFDLETVLHAKIRPLTVSPNRSFIGFFQPEST
Sbjct: 481 FDSLIREGSLEWRKLCENETYRERFPDKHFDLETVLHAKIRPLTVSPNRSFIGFFQPEST 540
Query: 541 EDGSGFDFLDGAMSFDNIWDEISRAAECSTEKPTLYIVSWNDHFFVLKVEAGAYYIIDTL 600
EDGSGFDFLDGAMSFDNIWDEISRAAECSTEKPTLYIVSWNDHFFVLKVEAGAYYIIDTL
Sbjct: 541 EDGSGFDFLDGAMSFDNIWDEISRAAECSTEKPTLYIVSWNDHFFVLKVEAGAYYIIDTL 600
Query: 601 GERLYEGCSQAYILKFDDNTTIHKVPAEKKEANPXXXXXXXXXXXXXXXXXXXXXXXEEC 660
GERLYEGCSQAYILKFDDNTTIHKVPAEKKEANP EEC
Sbjct: 601 GERLYEGCSQAYILKFDDNTTIHKVPAEKKEANPDSSGRLKDSSDSSSTDQDSGTDTEEC 660
Query: 661 ELVSKGKESCKEYIKSFLAAIPIRELQADIKKGIIASTPLHHRLQIEFHYTESCXXXXXX 720
ELVSKGKESCKEYIKSFLAAIPIRELQADIKKGIIASTPLHHRLQIEFHYTESC
Sbjct: 661 ELVSKGKESCKEYIKSFLAAIPIRELQADIKKGIIASTPLHHRLQIEFHYTESCPEEIPL 720
Query: 721 XXXXXXXXXXXXXSWPEPPPAMEVTLAPAVAAI 753
SWPEPPPAMEVTLAPAVAAI
Sbjct: 721 PAPLPAIEAPFEFSWPEPPPAMEVTLAPAVAAI 753
>Os01g0194000 Conserved hypothetical protein
Length = 466
Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/298 (48%), Positives = 191/298 (64%), Gaps = 32/298 (10%)
Query: 414 DNFVVGNWESKEVLSRDGHLRLSTQVFFASIDQRSERAAGESACTALVAVIADWFEANQD 473
D+ + G+WE++E SRD +L T VFFASIDQR + A GESACTALVAV+A AN
Sbjct: 189 DDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTALVAVLAAALHANHP 248
Query: 474 LMPIRSQFDSLIREGSLEWRKLCENETYRERFPDKHFDLETVLHAKIRPLTVSPNRSFIG 533
MP R + D+LIR+GS EWR+LC++E + FP++HFDLETVL A+ RP+ V +R+F+G
Sbjct: 249 TMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDRAFVG 308
Query: 534 FFQPESTEDGSGFDFLDGAMSFDNIWDEISRAAECSTEKPTLYIVSWNDHFFVLKVEAGA 593
FFQPES F L GAMSFD+IW EI+ AA + +YIVSWNDHFFVLKVE
Sbjct: 309 FFQPES------FASLSGAMSFDDIWREIAAAAGGEPGRADVYIVSWNDHFFVLKVEGDC 362
Query: 594 YYIIDTLGERLYEGCSQAYILKFDDNTTIHKVPAEKKEANPXXXXXXXXXXXXXXXXXXX 653
Y+++DTLGERL+EGC +AY+L+FD + + V +P
Sbjct: 363 YHVVDTLGERLFEGCDKAYMLRFDATSEMRSVSPPPSSPSPEEEV--------------- 407
Query: 654 XXXXEECELVSKGKESCKEYIKSFLAAIPIRELQADIKKGIIASTPLHHRLQIEFHYT 711
+ GKE C+E+IK FLAAIP+RE + ++++ A P H RLQIEFH+T
Sbjct: 408 ---------IVTGKECCREFIKRFLAAIPLRE-ELEMERKGCADAP-HRRLQIEFHFT 454
>Os03g0649000 Conserved hypothetical protein
Length = 204
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 1 MVARM--WPWPPPARKFRVRLVVRRAEGLXX-----XXXXXXXXXPVAEAKVAVEVRWKG 53
MVARM WP PP ARKFRVRLVVRRAEGL +VA EVRWKG
Sbjct: 1 MVARMMRWPRPPAARKFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPTRVAAEVRWKG 60
Query: 54 PKASPLGSLRR 64
PKASPL SLRR
Sbjct: 61 PKASPLSSLRR 71
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,223,289
Number of extensions: 735060
Number of successful extensions: 1837
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1828
Number of HSP's successfully gapped: 3
Length of query: 753
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 645
Effective length of database: 11,396,689
Effective search space: 7350864405
Effective search space used: 7350864405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)