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Os01g0194000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.0244) R2 : 0.659
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.81 (0.061) R2dC : 0.661 R2C : 0.657
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0789 (0.0513) R2dN8 : 0.00228 R2N8 : -0.00196
σ : 0.46
deviance : 96.56
__
_____
C
peak time of C : 8.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.87 0.398 9.96 0.567 1.34 0.667 0.42 -0.94 0.125 7.29 0.02997 16 -- --
76.18 0.407 9.96 0.581 1.33 0.668 -0.271 -- 0.13 7.31 0.01999 17 -- --
72.23 0.396 9.96 0.574 1.34 0.67 -- -0.806 0.125 7.29 0.01999 16 -- --
76.26 0.407 9.96 0.596 1.35 0.655 -- -- 0.142 7.33 0.02 16 -- --
145.43 0.565 10 0.585 -- 1.04 -- -0.96 0.0862 -- 0.01999 16 -- --
82.74 0.426 9.94 0.698 1.8 -- -0.756 -- 0.154 8.86 -- -- -- --
84.66 0.431 9.94 0.672 1.81 -- -- -- 0.154 8.83 -- -- -- --
151.43 0.576 10 0.618 -- 1.04 -- -- 0.098 -- 0.01999 16 -- --
85.89 0.432 9.97 -- 1.36 0.698 -- -- 0.12 7.16 0.007287 16 -- --
270.64 0.769 9.99 0.673 -- -- -- -- 0.167 -- -- -- -- --
96.56 0.46 9.95 -- 1.81 -- -- -- 0.0789 8.8 -- -- -- --
161.51 0.594 10 -- -- 1.05 -- -- 0.0289 -- 0.03 11 -- --
282.58 0.785 10 -- -- -- -- -- 0.0924 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.62 humidity 60.0 14400 > th dose independent rect. 5 2
3 69.80 temperature 10.0 90 > th dose dependent rect. 6 22
4 69.81 radiation 20.0 10 < th dose dependent rect. 6 23
6 70.00 temperature 10.0 10 > th dose dependent rect. 6 23
7 70.68 radiation 20.0 30 < th dose dependent rect. 7 21
12 70.94 radiation 40.0 90 < th dose dependent rect. 13 15
14 70.98 radiation 20.0 30 < th dose dependent rect. 12 16
18 71.08 wind 1.0 270 < th dose independent rect. 4 1
24 71.25 radiation 20.0 14400 < th dose independent rect. 5 1
28 71.39 wind 5.0 10 < th dose dependent rect. 5 1
29 71.39 temperature 15.0 10 > th dose dependent rect. 5 1
33 71.43 radiation 1.0 10 > th dose independent rect. 5 1
46 71.46 wind 9.0 10 < th dose independent rect. 6 23
48 71.46 wind 3.0 90 < th dose dependent rect. 4 2
49 71.51 temperature 15.0 90 > th dose independent rect. 6 22
51 71.52 humidity 60.0 14400 > th dose independent rect. 21 11
59 71.60 temperature 15.0 10 > th dose independent rect. 6 23
61 71.62 atmosphere 1015.0 10 < th dose independent rect. 6 23
63 71.64 temperature 30.0 30 < th dose dependent rect. 4 9
69 71.79 wind 5.0 10 < th dose independent rect. 5 1
76 71.94 precipitation 0.1 10 < th dose independent rect. 5 1
77 71.94 precipitation 0.1 10 < th dose dependent rect. 5 1
78 71.96 temperature 25.0 90 < th dose independent rect. 4 1
82 72.00 temperature 10.0 10 > th dose independent rect. 5 1
84 72.00 temperature 30.0 10 < th dose independent rect. 5 1
85 72.00 humidity 50.0 10 > th dose independent rect. 5 1
88 72.00 atmosphere 995.0 10 > th dose independent rect. 5 1
89 72.00 atmosphere 1010.0 10 < th dose independent rect. 5 1
91 72.00 radiation 20.0 10 < th dose independent rect. 5 1
96 72.02 radiation 1.0 10 > th dose independent rect. 11 19
105 72.10 wind 7.0 90 < th dose independent rect. 6 22
115 72.23 humidity 50.0 10 > th dose dependent rect. 5 1
120 72.32 temperature 15.0 90 > th dose dependent rect. 4 2
134 72.37 atmosphere 1015.0 90 < th dose independent rect. 6 22
137 72.40 precipitation 0.1 90 < th dose independent rect. 6 22
138 72.40 radiation 40.0 10 < th dose dependent rect. 5 1
140 72.40 precipitation 0.1 90 < th dose dependent rect. 6 22
144 72.46 temperature 25.0 30 < th dose independent rect. 13 15
149 72.57 atmosphere 1005.0 10 > th dose independent rect. 5 1
162 72.65 atmosphere 995.0 10 > th dose dependent rect. 5 1
167 72.67 wind 1.0 90 < th dose independent rect. 4 9
172 72.69 atmosphere 995.0 10 > th dose independent rect. 6 23
173 72.69 radiation 40.0 90 < th dose dependent rect. 15 13
188 72.80 precipitation 0.1 90 < th dose independent rect. 4 2
189 72.80 precipitation 0.1 90 < th dose dependent rect. 4 2
193 72.83 wind 1.0 90 < th dose independent rect. 4 7
194 72.83 radiation 10.0 30 < th dose independent rect. 8 20
195 72.83 humidity 90.0 90 > th dose dependent rect. 4 1
198 72.84 humidity 50.0 90 > th dose dependent rect. 4 2
203 72.85 wind 7.0 720 < th dose independent rect. 6 5
206 72.85 atmosphere 1015.0 90 < th dose dependent rect. 4 1
209 72.87 temperature 10.0 90 > th dose independent rect. 4 2
212 72.87 humidity 50.0 90 > th dose independent rect. 4 2
215 72.87 atmosphere 995.0 90 > th dose independent rect. 4 2
216 72.87 atmosphere 1010.0 90 < th dose independent rect. 4 2
218 72.87 radiation 20.0 90 < th dose independent rect. 4 2
221 72.87 wind 1.0 90 < th dose independent rect. 4 14
232 72.90 humidity 90.0 90 > th dose independent rect. 4 1
243 72.97 atmosphere 1015.0 10 < th dose dependent rect. 5 1
245 72.97 wind 1.0 90 < th dose dependent rect. 4 14
256 73.00 atmosphere 1015.0 720 < th dose independent rect. 23 10
259 73.01 precipitation 0.1 10 < th dose independent rect. 6 23
261 73.01 wind 3.0 10 < th dose dependent rect. 5 3
263 73.01 wind 1.0 90 < th dose dependent rect. 4 12
265 73.01 precipitation 0.1 10 < th dose dependent rect. 6 23
266 73.02 wind 1.0 90 < th dose independent rect. 4 19
267 73.02 radiation 40.0 90 < th dose dependent rect. 4 2
276 73.06 atmosphere 1015.0 90 < th dose dependent rect. 4 3
278 73.06 wind 1.0 90 < th dose dependent rect. 4 19
286 73.11 wind 1.0 90 < th dose dependent rect. 4 10
289 73.13 atmosphere 1015.0 720 < th dose independent rect. 23 19
302 73.22 temperature 15.0 270 > th dose independent rect. 6 12
312 73.27 radiation 10.0 30 < th dose independent rect. 12 16
350 73.40 temperature 15.0 720 > th dose independent rect. 6 5
356 73.43 radiation 1.0 10 < th dose dependent rect. 21 23
361 73.46 temperature 10.0 270 > th dose dependent rect. 22 12
387 73.53 atmosphere 995.0 90 > th dose independent rect. 6 22
394 73.56 temperature 30.0 270 < th dose independent rect. 18 12
408 73.63 humidity 70.0 270 > th dose independent rect. 17 13
418 73.65 wind 1.0 30 > th dose independent sin 3 NA
431 73.68 humidity 90.0 90 > th dose independent rect. 4 14
458 73.73 precipitation 0.1 270 < th dose independent rect. 6 12
461 73.73 precipitation 0.1 270 < th dose dependent rect. 6 12
466 73.74 temperature 15.0 720 > th dose independent rect. 21 14
473 73.77 humidity 90.0 720 < th dose independent rect. 20 1
497 73.79 radiation 1.0 10 > th dose dependent rect. 5 1
567 73.86 temperature 30.0 90 < th dose dependent rect. 4 1
571 73.87 wind 7.0 1440 < th dose independent rect. 5 3
591 73.93 humidity 90.0 90 > th dose dependent rect. 4 14
592 73.94 wind 5.0 720 < th dose independent rect. 8 1
593 73.94 temperature 20.0 720 > th dose independent rect. 22 4
596 73.95 humidity 70.0 1440 > th dose independent rect. 5 2
601 73.95 atmosphere 1015.0 90 < th dose dependent rect. 6 22
609 73.97 atmosphere 1015.0 10 < th dose dependent rect. 6 23
615 73.99 radiation 20.0 90 < th dose independent rect. 15 13
655 74.07 radiation 1.0 10 < th dose dependent no NA NA
665 74.07 radiation 1.0 10 < th dose dependent rect. 13 23
666 74.07 radiation 1.0 10 < th dose dependent rect. 15 23
687 74.09 atmosphere 1015.0 720 < th dose independent rect. 22 13
705 74.14 temperature 20.0 270 > th dose independent rect. 2 4
706 74.14 temperature 20.0 270 > th dose independent rect. 23 10
707 74.14 humidity 90.0 90 > th dose independent rect. 4 11
708 74.14 wind 9.0 270 < th dose independent rect. 6 12
710 74.14 humidity 50.0 10 > th dose independent rect. 6 23
726 74.17 humidity 90.0 90 > th dose independent rect. 4 8
741 74.19 wind 7.0 90 < th dose independent rect. 17 11
747 74.20 temperature 20.0 270 > th dose independent rect. 1 6
769 74.25 humidity 90.0 90 > th dose dependent rect. 4 8
775 74.27 temperature 10.0 1440 > th dose independent rect. 5 2
778 74.27 temperature 30.0 1440 < th dose independent rect. 5 2
782 74.27 humidity 50.0 1440 > th dose independent rect. 5 2
787 74.27 atmosphere 995.0 1440 > th dose independent rect. 5 2
788 74.27 atmosphere 1015.0 1440 < th dose independent rect. 5 2
793 74.27 temperature 25.0 90 < th dose independent rect. 4 8
795 74.27 temperature 10.0 1440 > th dose independent rect. 7 22
799 74.27 humidity 90.0 720 < th dose dependent rect. 20 1
801 74.28 temperature 15.0 720 > th dose independent rect. 9 14
823 74.33 radiation 1.0 10 < th dose dependent rect. 17 23
829 74.36 precipitation 0.1 90 < th dose independent rect. 17 11
835 74.36 precipitation 0.1 90 < th dose dependent rect. 17 11
837 74.37 wind 9.0 720 < th dose independent rect. 23 19
858 74.42 atmosphere 1015.0 90 < th dose dependent rect. 17 11
866 74.46 temperature 15.0 720 > th dose independent rect. 22 20
868 74.46 temperature 10.0 720 > th dose dependent rect. 8 1
870 74.46 temperature 10.0 90 > th dose dependent rect. 7 13
891 74.51 radiation 1.0 10 < th dose independent rect. 21 23
895 74.52 wind 9.0 90 < th dose dependent rect. 6 22
976 74.58 atmosphere 1015.0 10 < th dose dependent rect. 18 11
994 74.60 radiation 1.0 720 > th dose independent rect. 10 5
1000 74.60 temperature 10.0 10 > th dose dependent rect. 8 12