BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0194000 Os01g0194000|AK071994
(466 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11760.1 | chr3:3718529-3721123 FORWARD LENGTH=703 264 7e-71
AT5G04860.1 | chr5:1411760-1414459 REVERSE LENGTH=783 251 7e-67
AT2G10560.1 | chr2:4109862-4110698 REVERSE LENGTH=279 161 8e-40
AT2G25460.1 | chr2:10833175-10835374 REVERSE LENGTH=424 120 1e-27
>AT3G11760.1 | chr3:3718529-3721123 FORWARD LENGTH=703
Length = 702
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 183/293 (62%), Gaps = 20/293 (6%)
Query: 186 KYMDDDLA-GSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTXXXXXXXXXXX 244
++ +D A GSWE +E SRD KL+T VF ASIDQR + A GESACT
Sbjct: 406 EFGEDSFAIGSWEEKEVISRDGHMKLQTSVFLASIDQRSERAAGESACTALVAVIADWFQ 465
Query: 245 XNHPTMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDR 304
N MP + + D+LIR+GS EWR LC++E +M FP++HFDL+TVL A+ RP+ V +
Sbjct: 466 KNGNLMPIKSQFDSLIREGSLEWRNLCENETYMQKFPDKHFDLDTVLQAKIRPLTVIPGK 525
Query: 305 AFVGFFQPES------FASLSGAMSFDDIWREIA----AAAGGEPGRAD----VYIVSWN 350
+FVGFF P+ F L GAMSFD IW EI ++A G+ D VYIVSWN
Sbjct: 526 SFVGFFHPDGMINEGRFEFLQGAMSFDSIWAEIISLEESSANGDSYDDDSPPHVYIVSWN 585
Query: 351 DHFFVLKVEGDCYHVVDTLGERLFEGCDKAYMLRFDATS---EMRXXXXXXXXXXXXXXX 407
DHFFVLKVE + Y+++DTLGERL+EGCD+AY+L+FD + ++
Sbjct: 586 DHFFVLKVEKEAYYIIDTLGERLYEGCDQAYVLKFDHKTVIHKILHTEEAGSESEPESEI 645
Query: 408 IVTGKECCREFIKRFLAAIPLREELEMERKGCAD-AP-HRRLQIEFHFTVLKE 458
+ GKE C+E+IK FLAAIP+RE E +KG A AP H RLQIEFH+T E
Sbjct: 646 LSRGKESCKEYIKNFLAAIPIRELQEDIKKGLASTAPVHHRLQIEFHYTTNAE 698
>AT5G04860.1 | chr5:1411760-1414459 REVERSE LENGTH=783
Length = 782
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/304 (44%), Positives = 170/304 (55%), Gaps = 38/304 (12%)
Query: 189 DDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTXXXXXXXXXXXXNHP 248
DD + GSWET+E SRD KL VF ASIDQR + A GESACT N
Sbjct: 424 DDFVVGSWETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRD 483
Query: 249 TMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDRAFVG 308
+PTR E D+LIR+GSSEWR +C++E + FP++HFDLETVL A+ RPI V +R+F+G
Sbjct: 484 IIPTRSEFDSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIG 543
Query: 309 FFQPE-----------SFASLSGAMSFDDIWREIAAAAGGEPGRADV-YIVSWNDHFFVL 356
FF PE S L G MSFD IW E+ E V YIVSWNDHFFVL
Sbjct: 544 FFHPEKSEEEEGKEDASLDFLKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVL 603
Query: 357 KVEGDCYHVVDTLGERLFEGCDKAYMLRFDATSEMRXXXXXXXXXXX------------- 403
V D Y+++DTLGERL+EGC++AY+L+FD +E++
Sbjct: 604 LVNHDAYYIIDTLGERLYEGCNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNKS 663
Query: 404 -------------XXXXIVTGKECCREFIKRFLAAIPLREELEMERKGCADAPHRRLQIE 450
+ GKE CRE+IK FLAAIP+++ +KG + H RLQIE
Sbjct: 664 EQPERSKESEEQEEEEVVCRGKESCREYIKSFLAAIPIQQVKADMKKGLVSSLHHRLQIE 723
Query: 451 FHFT 454
H+T
Sbjct: 724 LHYT 727
>AT2G10560.1 | chr2:4109862-4110698 REVERSE LENGTH=279
Length = 278
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 119/223 (53%), Gaps = 38/223 (17%)
Query: 270 LCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDRAFVGFFQPE-----------SFASL 318
+C++E + FP++HFDLETVL A+ RPI V +R F+GFF E S L
Sbjct: 1 MCENEEYRERFPDKHFDLETVLQAKVRPICVVPERTFIGFFHREKSKEEEEKEDVSLDFL 60
Query: 319 SGAMSFDDIWREIAAAAGGEPGRADV-YIVSWNDHFFVLKVEGDCYHVVDTLGERLFEGC 377
G MSFD IW EI E V YIVSWNDH+FVL V D Y+++DTLGER++EGC
Sbjct: 61 KGVMSFDSIWEEIMKQEPEESASEHVIYIVSWNDHYFVLLVNHDAYYIIDTLGERVYEGC 120
Query: 378 DKAYMLRFDATSEMRX--------------------------XXXXXXXXXXXXXXIVTG 411
++AY+L+FD +E++ + G
Sbjct: 121 NQAYVLKFDQDAEIKRLPSVIKDNKADMGSQKQGGKNKYEQPERSKESEEQGEEVVVCRG 180
Query: 412 KECCREFIKRFLAAIPLREELEMERKGCADAPHRRLQIEFHFT 454
KE CRE+IK FLAAIP+++ ++G + H RLQIE ++T
Sbjct: 181 KESCREYIKSFLAAIPIQQVKADMKEGLVSSFHHRLQIELYYT 223
>AT2G25460.1 | chr2:10833175-10835374 REVERSE LENGTH=424
Length = 423
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 193 AGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTXXXXXXXXXXXXNHPTM-P 251
A W ++ SRD ++KL++ V+ ASIDQR + A GE+AC N + P
Sbjct: 279 ANKWVMKDLVSRDGKSKLKSEVYLASIDQRSEQAAGEAACAAVAVVVAHWFHANPKLINP 338
Query: 252 TRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDRAFVGFFQ 311
+ D+LI GSS W+ LCD E+++ FPNRHFDLET+++A RP+ V D++F G F
Sbjct: 339 SGTAFDSLITQGSSLWQSLCDKESYLRLFPNRHFDLETIVSANLRPVRVCTDKSFTGLFS 398
Query: 312 PESFASLSGAMSFDDIWREIA 332
PE FASL G MSFD IW E++
Sbjct: 399 PERFASLDGLMSFDQIWDELS 419
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,746,629
Number of extensions: 270491
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 6
Length of query: 466
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,310,137
Effective search space: 3024889868
Effective search space used: 3024889868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)