BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0194000 Os01g0194000|AK071994
         (466 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0194000  Conserved hypothetical protein                      706   0.0  
Os12g0620600  Conserved hypothetical protein                      265   5e-71

>Os01g0194000 Conserved hypothetical protein
          Length = 466

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/466 (76%), Positives = 358/466 (76%)

Query: 1   MISLEECCWEMXXXXXXXXXXXXXXLVVVPIRVRKDGWASDAMLYVNVELVDANTPSENI 60
           MISLEECCWEM              LVVVPIRVRKDGWASDAMLYVNVELVDANTPSENI
Sbjct: 1   MISLEECCWEMQLQQQQKRGATQQQLVVVPIRVRKDGWASDAMLYVNVELVDANTPSENI 60

Query: 61  GRTVSFRESXXXXXXXXXXMRDNRKSLEAGTYHEVLDLKQLLDLADREHKVAVYXXXXXX 120
           GRTVSFRES          MRDNRKSLEAGTYHEVLDLKQLLDLADREHKVAVY      
Sbjct: 61  GRTVSFRESRARTTTPAPTMRDNRKSLEAGTYHEVLDLKQLLDLADREHKVAVYSRSKRN 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRLLPWXXXXXXXXXXXXXXLS 180
                                                KRRLLPW              LS
Sbjct: 121 SDSSSVSSMSSVSSSSTISISSASSSGGASPEPGLSSKRRLLPWRRKSRDFDKRSSESLS 180

Query: 181 QELPMKYMDDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTXXXXXXX 240
           QELPMKYMDDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACT       
Sbjct: 181 QELPMKYMDDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTALVAVLA 240

Query: 241 XXXXXNHPTMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAV 300
                NHPTMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAV
Sbjct: 241 AALHANHPTMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAV 300

Query: 301 QHDRAFVGFFQPESFASLSGAMSFDDIWREIAAAAGGEPGRADVYIVSWNDHFFVLKVEG 360
           QHDRAFVGFFQPESFASLSGAMSFDDIWREIAAAAGGEPGRADVYIVSWNDHFFVLKVEG
Sbjct: 301 QHDRAFVGFFQPESFASLSGAMSFDDIWREIAAAAGGEPGRADVYIVSWNDHFFVLKVEG 360

Query: 361 DCYHVVDTLGERLFEGCDKAYMLRFDATSEMRXXXXXXXXXXXXXXXIVTGKECCREFIK 420
           DCYHVVDTLGERLFEGCDKAYMLRFDATSEMR               IVTGKECCREFIK
Sbjct: 361 DCYHVVDTLGERLFEGCDKAYMLRFDATSEMRSVSPPPSSPSPEEEVIVTGKECCREFIK 420

Query: 421 RFLAAIPLREELEMERKGCADAPHRRLQIEFHFTVLKEEEQDQARR 466
           RFLAAIPLREELEMERKGCADAPHRRLQIEFHFTVLKEEEQDQARR
Sbjct: 421 RFLAAIPLREELEMERKGCADAPHRRLQIEFHFTVLKEEEQDQARR 466



>Os12g0620600 Conserved hypothetical protein
          Length = 753

 Score =  265 bits (677), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/298 (45%), Positives = 180/298 (60%), Gaps = 32/298 (10%)

Query: 189 DDDLAGSWETREFTSRDSETKLRTPVFFASIDQRDDSAGGESACTXXXXXXXXXXXXNHP 248
           D+ + G+WE++E  SRD   +L T VFFASIDQR + A GESACT            N  
Sbjct: 414 DNFVVGNWESKEVLSRDGHLRLSTQVFFASIDQRSERAAGESACTALVAVIADWFEANQD 473

Query: 249 TMPTRPELDALIRDGSSEWRRLCDDEAHMAAFPNRHFDLETVLAARARPIAVQHDRAFVG 308
            MP R + D+LIR+GS EWR+LC++E +   FP++HFDLETVL A+ RP+ V  +R+F+G
Sbjct: 474 LMPIRSQFDSLIREGSLEWRKLCENETYRERFPDKHFDLETVLHAKIRPLTVSPNRSFIG 533

Query: 309 FFQPES------FASLSGAMSFDDIWREIAAAAGGEPGRADVYIVSWNDHFFVLKVEGDC 362
           FFQPES      F  L GAMSFD+IW EI+ AA     +  +YIVSWNDHFFVLKVE   
Sbjct: 534 FFQPESTEDGSGFDFLDGAMSFDNIWDEISRAAECSTEKPTLYIVSWNDHFFVLKVEAGA 593

Query: 363 YHVVDTLGERLFEGCDKAYMLRFDATSEMRXXXXXXXXXXXXXXX--------------- 407
           Y+++DTLGERL+EGC +AY+L+FD  + +                               
Sbjct: 594 YYIIDTLGERLYEGCSQAYILKFDDNTTIHKVPAEKKEANPDSSGRLKDSSDSSSTDQDS 653

Query: 408 ---------IVTGKECCREFIKRFLAAIPLRE-ELEMERKGCADAP-HRRLQIEFHFT 454
                    +  GKE C+E+IK FLAAIP+RE + ++++   A  P H RLQIEFH+T
Sbjct: 654 GTDTEECELVSKGKESCKEYIKSFLAAIPIRELQADIKKGIIASTPLHHRLQIEFHYT 711



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,627,980
Number of extensions: 460047
Number of successful extensions: 862
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)