BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0617100 Os12g0617100|AK101044
(607 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0617100 Similar to Translation initiation factor eIF-2... 1051 0.0
Os03g0645200 Similar to Translation initiation factor eIF-2... 272 6e-73
Os12g0497400 Initiation factor 2B related family protein 75 2e-13
>Os12g0617100 Similar to Translation initiation factor eIF-2B delta subunit
(eIF-2B GDP-GTP exchange factor) (Guanine nucleotide
exchange factor subunit GCD2) (GCD complex subunit GCD2)
Length = 607
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/607 (85%), Positives = 522/607 (85%)
Query: 1 MDLRRPTTRSSSGGVEPRYRQVGFVTTTAEPXXXXXXXXXXPRGSDVYPGSLSPVMIPPP 60
MDLRRPTTRSSSGGVEPRYRQVGFVTTTAEP PRGSDVYPGSLSPVMIPPP
Sbjct: 1 MDLRRPTTRSSSGGVEPRYRQVGFVTTTAEPAAAAASSSSSPRGSDVYPGSLSPVMIPPP 60
Query: 61 RIPDHLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWARPPPPALLESK 120
RIPDHLT WARPPPPALLESK
Sbjct: 61 RIPDHLTALSPAPVSLLPSSPPPPSSSRLDAAESDLDDDDDDDVDVSWARPPPPALLESK 120
Query: 121 EGLPDTQNEGAPAPAPVQQKQKLSXXXXXXXXXXXXXXXXXXXXXGLSRKSVATVSTSNA 180
EGLPDTQNEGAPAPAPVQQKQKLS GLSRKSVATVSTSNA
Sbjct: 121 EGLPDTQNEGAPAPAPVQQKQKLSKAERRAIQEAQRAAKASAKEAGLSRKSVATVSTSNA 180
Query: 181 AMSKQLKTVKTPPKKDLPQLTPPVASEKKTSEHXXXXXXXXXXXXXXMQFDNVHRVEKTK 240
AMSKQLKTVKTPPKKDLPQLTPPVASEKKTSEH MQFDNVHRVEKTK
Sbjct: 181 AMSKQLKTVKTPPKKDLPQLTPPVASEKKTSEHPPDRDRKKDVPPPRMQFDNVHRVEKTK 240
Query: 241 KHSLVNQAEAQNRVELFRHLPQYVHGTQLPDLESKFFHLDLMHPSVYKVGLQFLSGVISG 300
KHSLVNQAEAQNRVELFRHLPQYVHGTQLPDLESKFFHLDLMHPSVYKVGLQFLSGVISG
Sbjct: 241 KHSLVNQAEAQNRVELFRHLPQYVHGTQLPDLESKFFHLDLMHPSVYKVGLQFLSGVISG 300
Query: 301 GNACCVAMLLAFREAIKDYSTPSTKTLNRDLTAKISSYVSFLIECKPLSISMGNAIRFLK 360
GNACCVAMLLAFREAIKDYSTPSTKTLNRDLTAKISSYVSFLIECKPLSISMGNAIRFLK
Sbjct: 301 GNACCVAMLLAFREAIKDYSTPSTKTLNRDLTAKISSYVSFLIECKPLSISMGNAIRFLK 360
Query: 361 NRIAKLLLTLSESEAKASLQSDIDRFINEKIIIADHVIVSHAIAKVRDDDVLLTYASSSV 420
NRIAKLLLTLSESEAKASLQSDIDRFINEKIIIADHVIVSHAIAKVRDDDVLLTYASSSV
Sbjct: 361 NRIAKLLLTLSESEAKASLQSDIDRFINEKIIIADHVIVSHAIAKVRDDDVLLTYASSSV 420
Query: 421 VEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGISCTYTHINAISYIMHEVTRV 480
VEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGISCTYTHINAISYIMHEVTRV
Sbjct: 421 VEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGISCTYTHINAISYIMHEVTRV 480
Query: 481 FLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCCEAYKLHERVQLDSICSNELGDPD 540
FLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCCEAYKLHERVQLDSICSNELGDPD
Sbjct: 481 FLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCCEAYKLHERVQLDSICSNELGDPD 540
Query: 541 VISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDYVSMIITEYGMLPPTSVPVIVREY 600
VISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDYVSMIITEYGMLPPTSVPVIVREY
Sbjct: 541 VISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDYVSMIITEYGMLPPTSVPVIVREY 600
Query: 601 RREHIWI 607
RREHIWI
Sbjct: 601 RREHIWI 607
>Os03g0645200 Similar to Translation initiation factor eIF-2B delta subunit
(eIF-2B GDP-GTP exchange factor)
Length = 150
Score = 272 bits (695), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 127/150 (84%), Positives = 136/150 (90%)
Query: 458 KGISCTYTHINAISYIMHEVTRVFLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCC 517
KGI+CTYTHINAISYIMHEVTRVFLGASSILSNG VYS VGTA+VAMVAHAFG+PVLVCC
Sbjct: 1 KGINCTYTHINAISYIMHEVTRVFLGASSILSNGTVYSRVGTASVAMVAHAFGIPVLVCC 60
Query: 518 EAYKLHERVQLDSICSNELGDPDVISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDY 577
EAYK HERVQLDSIC+NELGDPDVI +VP + DL HLKN NENLQLLNL YD PSDY
Sbjct: 61 EAYKFHERVQLDSICANELGDPDVILKVPGKADLGHLKNLADNENLQLLNLTYDATPSDY 120
Query: 578 VSMIITEYGMLPPTSVPVIVREYRREHIWI 607
VSMIIT+YGMLPPTSVPVIVREYR+E +WI
Sbjct: 121 VSMIITDYGMLPPTSVPVIVREYRKEQLWI 150
>Os12g0497400 Initiation factor 2B related family protein
Length = 299
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 406 VRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGISCTYT 465
+ D +L + S VV + A K FRV+ + RP+ G + + L A GI
Sbjct: 116 ISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSNELAALGIPVKVL 175
Query: 466 HINAISYIMHEVTRVFLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCCEAYKLHER 525
+A++Y M EV VF+GA ++ +G + + +GT +A+VAH+ PV V E+YK
Sbjct: 176 IDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 235
Query: 526 VQLDSICSNELGDP-DVISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDYVSMIITE 584
LD P D +P +++ D P Y+++++T+
Sbjct: 236 YPLDQKDMTPAHRPIDFGVPIP--------------AGVEVETSARDYTPPQYLTLLLTD 281
Query: 585 YGMLPPTSV 593
G+L P+ V
Sbjct: 282 LGVLTPSVV 290
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,204,881
Number of extensions: 664712
Number of successful extensions: 2300
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 4
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)