Os12g0497400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Initiation factor 2B related family protein.
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Os12g0497400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Initiation factor 2B related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.85 | 0.215 | 11 | 0.0379 | 0.212 | 0.698 | 0.0532 | 1.25 | 0.0163 | 10.1 | 14.38 | 3777 | -- | -- |
| 21.66 | 0.217 | 11.1 | -0.207 | 0.212 | 0.571 | -0.0273 | -- | -0.062 | 9.77 | 19.61 | 3618 | -- | -- |
| 20.86 | 0.213 | 11 | 0.0401 | 0.212 | 0.697 | -- | 1.24 | 0.0166 | 10.1 | 14.43 | 3778 | -- | -- |
| 21.63 | 0.217 | 11.1 | -0.2 | 0.215 | 0.566 | -- | -- | -0.0506 | 10 | 19.95 | 3721 | -- | -- |
| 22.83 | 0.223 | 11 | 0.0219 | -- | 0.674 | -- | 1.2 | 0.018 | -- | 13.41 | 4426 | -- | -- |
| 29.67 | 0.255 | 11 | 0.0422 | 0.167 | -- | -0.0586 | -- | 0.0665 | 9.28 | -- | -- | -- | -- |
| 29.68 | 0.255 | 11 | 0.0402 | 0.167 | -- | -- | -- | 0.0665 | 9.34 | -- | -- | -- | -- |
| 23.54 | 0.226 | 11.1 | -0.2 | -- | 0.535 | -- | -- | -0.042 | -- | 20.51 | 4446 | -- | -- |
| 22.39 | 0.22 | 11.1 | -- | 0.195 | 0.466 | -- | -- | -0.0123 | 9.81 | 21.54 | 3276 | -- | -- |
| 31.31 | 0.261 | 11 | 0.0393 | -- | -- | -- | -- | 0.0672 | -- | -- | -- | -- | -- |
| 29.72 | 0.255 | 11 | -- | 0.167 | -- | -- | -- | 0.062 | 9.32 | -- | -- | -- | -- |
| 24.21 | 0.229 | 11 | -- | -- | 0.457 | -- | -- | 0.0342 | -- | 23.71 | 4499 | -- | -- |
| 31.35 | 0.261 | 11 | -- | -- | -- | -- | -- | 0.0628 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.78 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 5 | 19.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 22 | 20.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 24 | 20.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 29 | 20.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 33 | 20.08 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 96 | 20.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 134 | 20.24 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 213 | 20.33 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 230 | 20.35 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 513 | 20.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 531 | 20.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 546 | 20.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 574 | 20.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 670 | 20.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 754 | 20.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 905 | 20.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 926 | 20.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 946 | 20.83 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |