BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0497400 Os12g0497400|AK071243
(299 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53900.1 | chr1:20127634-20130834 FORWARD LENGTH=581 442 e-125
AT1G53880.1 | chr1:20115069-20118269 FORWARD LENGTH=581 442 e-125
AT1G72340.1 | chr1:27236898-27238482 FORWARD LENGTH=383 441 e-124
AT3G07300.3 | chr3:2324967-2327380 REVERSE LENGTH=410 84 7e-17
AT1G48970.1 | chr1:18113868-18117547 REVERSE LENGTH=667 75 5e-14
AT5G38640.1 | chr5:15468020-15470674 REVERSE LENGTH=643 73 2e-13
AT2G44070.1 | chr2:18231097-18232469 REVERSE LENGTH=334 70 1e-12
AT2G05830.1 | chr2:2229759-2231839 FORWARD LENGTH=375 63 2e-10
>AT1G53900.1 | chr1:20127634-20130834 FORWARD LENGTH=581
Length = 580
Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/270 (79%), Positives = 233/270 (86%)
Query: 30 RSSRATTMMELEIELKKASDKLKSWDATSISLSAACDLFMRFVTRTSHLEHEKFDAAKSR 89
R+S ATTMMELEIELKKASD LKSWD TSISL+A CDLFMR+VTRTS LE E F++AKSR
Sbjct: 311 RASEATTMMELEIELKKASDTLKSWDTTSISLTAGCDLFMRYVTRTSALEFEDFNSAKSR 370
Query: 90 LIERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLC 149
++ER EKFGEIS KAR IAMLSQDFI DGCTILVHG+SRVV E+LK +A N+KLFRVLC
Sbjct: 371 VLERAEKFGEISCKARTIIAMLSQDFIFDGCTILVHGFSRVVFEILKTSAQNKKLFRVLC 430
Query: 150 TEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 209
TEGRPD+TG+ ++NELA L IPVK+LIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT
Sbjct: 431 TEGRPDKTGVLLANELAKLDIPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 490
Query: 210 YQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMTPAHRPIDFGVPIPAGVEVETSARDY 269
YQIALVA SMNKPVYVAAESYKFARLYPLDQKD+ PA RPIDF VP+P VEVE SARDY
Sbjct: 491 YQIALVAQSMNKPVYVAAESYKFARLYPLDQKDLEPALRPIDFSVPVPPKVEVERSARDY 550
Query: 270 TPPQYXXXXXXXXXXXXPSVVSDELIQLYL 299
TPPQY PSVVSDELIQLYL
Sbjct: 551 TPPQYLTLLFTDLGVLTPSVVSDELIQLYL 580
>AT1G53880.1 | chr1:20115069-20118269 FORWARD LENGTH=581
Length = 580
Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/270 (79%), Positives = 233/270 (86%)
Query: 30 RSSRATTMMELEIELKKASDKLKSWDATSISLSAACDLFMRFVTRTSHLEHEKFDAAKSR 89
R+S ATTMMELEIELKKASD LKSWD TSISL+A CDLFMR+VTRTS LE E F++AKSR
Sbjct: 311 RASEATTMMELEIELKKASDTLKSWDTTSISLTAGCDLFMRYVTRTSALEFEDFNSAKSR 370
Query: 90 LIERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLC 149
++ER EKFGEIS KAR IAMLSQDFI DGCTILVHG+SRVV E+LK +A N+KLFRVLC
Sbjct: 371 VLERAEKFGEISCKARTIIAMLSQDFIFDGCTILVHGFSRVVFEILKTSAQNKKLFRVLC 430
Query: 150 TEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 209
TEGRPD+TG+ ++NELA L IPVK+LIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT
Sbjct: 431 TEGRPDKTGVLLANELAKLDIPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 490
Query: 210 YQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMTPAHRPIDFGVPIPAGVEVETSARDY 269
YQIALVA SMNKPVYVAAESYKFARLYPLDQKD+ PA RPIDF VP+P VEVE SARDY
Sbjct: 491 YQIALVAQSMNKPVYVAAESYKFARLYPLDQKDLEPALRPIDFSVPVPPKVEVERSARDY 550
Query: 270 TPPQYXXXXXXXXXXXXPSVVSDELIQLYL 299
TPPQY PSVVSDELIQLYL
Sbjct: 551 TPPQYLTLLFTDLGVLTPSVVSDELIQLYL 580
>AT1G72340.1 | chr1:27236898-27238482 FORWARD LENGTH=383
Length = 382
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/270 (80%), Positives = 234/270 (86%)
Query: 30 RSSRATTMMELEIELKKASDKLKSWDATSISLSAACDLFMRFVTRTSHLEHEKFDAAKSR 89
R+S A+TMMELEIELKKASD LKSWD TSISL+A CDLF+R+VTRTS LE+E F++AKSR
Sbjct: 113 RASEASTMMELEIELKKASDTLKSWDKTSISLTAGCDLFIRYVTRTSALEYEDFNSAKSR 172
Query: 90 LIERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLC 149
L+ER EKFGEIS KAR+ IAMLSQDFI DGCTILVHG SRVVLE+LK AA N KLFRVLC
Sbjct: 173 LLERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGLSRVVLEILKTAAQNNKLFRVLC 232
Query: 150 TEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 209
TEGRPD TG+ +S+EL+ L IPVK+L+DSAVAYSMDEVDMVFVGADGVVESGGIINMMGT
Sbjct: 233 TEGRPDGTGVLLSSELSKLDIPVKLLLDSAVAYSMDEVDMVFVGADGVVESGGIINMMGT 292
Query: 210 YQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMTPAHRPIDFGVPIPAGVEVETSARDY 269
YQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM PA RPI+FGV IP VEVE SARDY
Sbjct: 293 YQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIEFGVKIPTKVEVERSARDY 352
Query: 270 TPPQYXXXXXXXXXXXXPSVVSDELIQLYL 299
TPPQY PSVVSDELIQLYL
Sbjct: 353 TPPQYLTLLFTDLGVLSPSVVSDELIQLYL 382
>AT3G07300.3 | chr3:2324967-2327380 REVERSE LENGTH=410
Length = 409
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 105 RKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSNE 164
+ IA + + I IL G SR VLE L A ++ FRV EG P G ++ E
Sbjct: 197 HEQIAEQAIEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKE 256
Query: 165 LAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVY 224
L A G+ V+ DSAV + V+MV +GA V+ +GG+I +G AL A P
Sbjct: 257 LVARGLQTTVITDSAVFAMISRVNMVIIGAHAVMANGGVIGPVGVNMAALAAQKHAVPFV 316
Query: 225 VAAESYKFARLYPLDQKDMTPAHRP----IDFG-----VPIPAG---VEVETSARDYTPP 272
V A S+K LYP + + + R +DFG + AG ++V DY PP
Sbjct: 317 VLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCLDFGAGSGSLQVVNPTFDYVPP 376
Query: 273 Q 273
Sbjct: 377 N 377
>AT1G48970.1 | chr1:18113868-18117547 REVERSE LENGTH=667
Length = 666
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 86 AKSRLI-ERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKL 144
AKS L + G E ++ A K I + I DG +L +G+S VV +L A K
Sbjct: 433 AKSSLCSDIGRFIDEKTIIADKAIVQHAVTKIRDGEVLLTYGFSCVVEMILLYAHEIGKK 492
Query: 145 FRVLCTEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGII 204
FRV+ + RP+ G ++ L G+ +A++Y M E VF+GA + +G +
Sbjct: 493 FRVVIVDSRPNLEGQKLLRRLVTRGLDCTYTHINAISYIMREATRVFLGASSIYSNGTLY 552
Query: 205 NMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLD 239
+GT IA+VA++ + PV V E+YKF LD
Sbjct: 553 ARVGTSCIAMVANAFSVPVIVCCEAYKFHERVLLD 587
>AT5G38640.1 | chr5:15468020-15470674 REVERSE LENGTH=643
Length = 642
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%)
Query: 116 ISDGCTILVHGYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSNELAALGIPVKVL 175
I DG +L +G V V+ A RK FRVL + RP G + L GI
Sbjct: 441 IRDGDVLLTYGSPTAVEMVILHAHELRKKFRVLVVDSRPKLEGQLLLRRLIKRGINCTYT 500
Query: 176 IDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 235
+A++Y M EV VF+GA V+ +G + + +GT +A+VA++ PV V E+YKF
Sbjct: 501 HINAISYIMHEVTKVFLGASSVLSNGTVYSRVGTACVAMVANAFRVPVLVCCEAYKFHER 560
Query: 236 YPLD 239
LD
Sbjct: 561 VQLD 564
>AT2G44070.1 | chr2:18231097-18232469 REVERSE LENGTH=334
Length = 333
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 86 AKSRLIERGEKF-GEISLKARKTIAMLSQDFISDGCTILVHGYSRVVLEVLKLAASNRKL 144
AK+ L E+F E + A I + I DG +L +G S V+ +L A K
Sbjct: 94 AKASLHSDIERFINEKIIGADTVIVEHAVTKIRDGDVLLTYGSSTVIEMILVHAHELGKK 153
Query: 145 FRVLCTEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGII 204
FRV + RP G + L GI +A++Y M +V VF+GA V +G +
Sbjct: 154 FRVFVVDSRPKLQGKLLLRRLIKRGINCTYTHITAISYIMHQVTKVFLGASSVFSNGTVY 213
Query: 205 NMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLD 239
+ +GT +A+VA++ PV V E+YKF LD
Sbjct: 214 SRVGTACVAMVANAFRVPVLVCCEAYKFHEKVQLD 248
>AT2G05830.1 | chr2:2229759-2231839 FORWARD LENGTH=375
Length = 374
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 126 GYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSN-ELAALGIPVKVLIDSAVAYSM 184
GY L V++ + L R CTE RP G R++ EL IP ++ DSA A M
Sbjct: 182 GYG-TALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALM 240
Query: 185 DE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA---------ESYKFA 233
+ VD V VGAD V +G N +GTY +AL A P YVAA S K
Sbjct: 241 KDGRVDGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPLTSVDLSLSSGKEI 300
Query: 234 RLYPLDQKDMTPAHRPIDFGVPIPAGVEVETSARDYTPPQ 273
+ K++ H + + P G+ V A D TP +
Sbjct: 301 VIEERSPKELMHTHGGLGERIAAP-GISVWNPAFDMTPAE 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,161,286
Number of extensions: 188215
Number of successful extensions: 418
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 8
Length of query: 299
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,419,801
Effective search space: 1692380001
Effective search space used: 1692380001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)