FiT-DB / Search/ Help/ Sample detail
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Os12g0617100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD2) (GCD complex subunit GCD2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.83 | 0.261 | 8.39 | 0.729 | 0.818 | 1.93 | -0.224 | 3.52 | 0.47 | 4.28 | 0.488 | 1483 | -- | -- |
| 34.86 | 0.275 | 8.39 | 0.953 | 0.588 | 1.32 | -0.163 | -- | 0.444 | 5.38 | 1.795 | 1625 | -- | -- |
| 30.89 | 0.259 | 8.39 | 0.73 | 0.837 | 1.95 | -- | 3.58 | 0.47 | 4.16 | 0.438 | 1475 | -- | -- |
| 34.08 | 0.272 | 8.35 | 1.05 | 0.675 | 1.34 | -- | -- | 0.512 | 4.95 | 2.015 | 1575 | -- | -- |
| 35.19 | 0.276 | 8.35 | 0.9 | -- | 1.63 | -- | 0.467 | 0.515 | -- | 1.99 | 1904 | -- | -- |
| 47.31 | 0.322 | 8.37 | 0.771 | 0.898 | -- | -0.0824 | -- | 0.383 | 3.59 | -- | -- | -- | -- |
| 47.33 | 0.322 | 8.37 | 0.772 | 0.897 | -- | -- | -- | 0.384 | 3.59 | -- | -- | -- | -- |
| 35.24 | 0.276 | 8.34 | 0.966 | -- | 1.63 | -- | -- | 0.534 | -- | 2.153 | 1903 | -- | -- |
| 55.84 | 0.348 | 8.35 | -- | 0.728 | 0.728 | -- | -- | 0.419 | 4.34 | 7.918 | 1614 | -- | -- |
| 92.18 | 0.449 | 8.37 | 0.81 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 63.04 | 0.371 | 8.39 | -- | 0.913 | -- | -- | -- | 0.298 | 3.58 | -- | -- | -- | -- |
| 58.69 | 0.357 | 8.38 | -- | -- | 0.947 | -- | -- | 0.347 | -- | 8.578 | 468 | -- | -- |
| 109.47 | 0.488 | 8.39 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 2 | 31.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 7 | 31.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 8 | 31.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 9 | 31.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 17 | 32.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 20 | 32.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 40 | 32.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 53 | 32.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 80 | 32.12 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 96 | 32.19 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 124 | 32.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 142 | 32.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 173 | 32.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 177 | 32.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 178 | 32.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 197 | 32.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 230 | 32.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 231 | 32.73 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 253 | 32.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 268 | 32.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 300 | 32.79 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 302 | 32.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 318 | 32.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 331 | 32.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 353 | 32.87 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 362 | 32.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 400 | 32.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 455 | 33.05 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 462 | 33.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 467 | 33.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 486 | 33.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 487 | 33.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 496 | 33.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 533 | 33.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 540 | 33.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 541 | 33.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 601 | 33.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 709 | 33.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 748 | 33.37 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 840 | 33.45 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 902 | 33.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 947 | 33.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
