BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0606100 Os12g0606100|Os12g0606100
(1055 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0606100 Spc97/Spc98 family protein 2196 0.0
Os02g0523300 Spc97/Spc98 family protein 2038 0.0
Os09g0446200 Spc97/Spc98 family protein 69 1e-11
>Os12g0606100 Spc97/Spc98 family protein
Length = 1055
Score = 2196 bits (5690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1055/1055 (100%), Positives = 1055/1055 (100%)
Query: 1 MATITIVRITIGEEKKICRFLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLM 60
MATITIVRITIGEEKKICRFLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLM
Sbjct: 1 MATITIVRITIGEEKKICRFLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLM 60
Query: 61 EADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFQVLQGFDTVLLYWDKTAPG 120
EADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFQVLQGFDTVLLYWDKTAPG
Sbjct: 61 EADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFQVLQGFDTVLLYWDKTAPG 120
Query: 121 YCEKAGVYVSHLSQTSLRAVLKPFLFAATWLKQVELFVGRRLRKAALKEEEQLFLSVDRT 180
YCEKAGVYVSHLSQTSLRAVLKPFLFAATWLKQVELFVGRRLRKAALKEEEQLFLSVDRT
Sbjct: 121 YCEKAGVYVSHLSQTSLRAVLKPFLFAATWLKQVELFVGRRLRKAALKEEEQLFLSVDRT 180
Query: 181 ITLLGLTDSMSSLCSGAEHLYQVVQGAVPDAFWNSGAQIASSEVAVHAVNHLFKKLNEVC 240
ITLLGLTDSMSSLCSGAEHLYQVVQGAVPDAFWNSGAQIASSEVAVHAVNHLFKKLNEVC
Sbjct: 181 ITLLGLTDSMSSLCSGAEHLYQVVQGAVPDAFWNSGAQIASSEVAVHAVNHLFKKLNEVC 240
Query: 241 LVEDGEGEPYHMLLVIFAETLLPYLQCLDSWLYDGILDDPYEEMFFYANKAVTIDQPAFW 300
LVEDGEGEPYHMLLVIFAETLLPYLQCLDSWLYDGILDDPYEEMFFYANKAVTIDQPAFW
Sbjct: 241 LVEDGEGEPYHMLLVIFAETLLPYLQCLDSWLYDGILDDPYEEMFFYANKAVTIDQPAFW 300
Query: 301 EMSYMLRVRGPRTDSSSTLADNESIRKKELINQEATAAAALLKSSNQGCADILCPVFLKD 360
EMSYMLRVRGPRTDSSSTLADNESIRKKELINQEATAAAALLKSSNQGCADILCPVFLKD
Sbjct: 301 EMSYMLRVRGPRTDSSSTLADNESIRKKELINQEATAAAALLKSSNQGCADILCPVFLKD 360
Query: 361 IARAILSAGKSFQLVQHVQETHRIQTREVVHEFNVDQHGNYISQQKFRPDTSSIRIQDKR 420
IARAILSAGKSFQLVQHVQETHRIQTREVVHEFNVDQHGNYISQQKFRPDTSSIRIQDKR
Sbjct: 361 IARAILSAGKSFQLVQHVQETHRIQTREVVHEFNVDQHGNYISQQKFRPDTSSIRIQDKR 420
Query: 421 EDIIEESAGQFGNNACKMGFLTLSESFLICLSGLLENGDHVDDYLRKLCADHAPVNKSIV 480
EDIIEESAGQFGNNACKMGFLTLSESFLICLSGLLENGDHVDDYLRKLCADHAPVNKSIV
Sbjct: 421 EDIIEESAGQFGNNACKMGFLTLSESFLICLSGLLENGDHVDDYLRKLCADHAPVNKSIV 480
Query: 481 HSKSNVQETEEVCGENSSEKTWLKLLRDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQD 540
HSKSNVQETEEVCGENSSEKTWLKLLRDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQD
Sbjct: 481 HSKSNVQETEEVCGENSSEKTWLKLLRDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQD 540
Query: 541 VSSTAVESHFNLSCYENPGITACQEILERNKNSWSDLNISKSFHLPPLNDENIRKSIFGD 600
VSSTAVESHFNLSCYENPGITACQEILERNKNSWSDLNISKSFHLPPLNDENIRKSIFGD
Sbjct: 541 VSSTAVESHFNLSCYENPGITACQEILERNKNSWSDLNISKSFHLPPLNDENIRKSIFGD 600
Query: 601 RDSSGTSPGDTLSTTYFPRLDGTDYKFGFQFDDSEYIRQEDDRRTLESLYTFPTLLPCVN 660
RDSSGTSPGDTLSTTYFPRLDGTDYKFGFQFDDSEYIRQEDDRRTLESLYTFPTLLPCVN
Sbjct: 601 RDSSGTSPGDTLSTTYFPRLDGTDYKFGFQFDDSEYIRQEDDRRTLESLYTFPTLLPCVN 660
Query: 661 ENVPLSEILPLQKDSTLASRALKFIQSMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQIL 720
ENVPLSEILPLQKDSTLASRALKFIQSMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQIL
Sbjct: 661 ENVPLSEILPLQKDSTLASRALKFIQSMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQIL 720
Query: 721 SKLMGDWRLMDELFVLRAIYLLGSGDMLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIR 780
SKLMGDWRLMDELFVLRAIYLLGSGDMLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIR
Sbjct: 721 SKLMGDWRLMDELFVLRAIYLLGSGDMLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIR 780
Query: 781 NSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLD 840
NSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLD
Sbjct: 781 NSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLD 840
Query: 841 LIVNTEALKKYNQVMAFLLKVKRAKFILDKTRKWMWKGGGSTTHNFKQHLIVEQKLLHFV 900
LIVNTEALKKYNQVMAFLLKVKRAKFILDKTRKWMWKGGGSTTHNFKQHLIVEQKLLHFV
Sbjct: 841 LIVNTEALKKYNQVMAFLLKVKRAKFILDKTRKWMWKGGGSTTHNFKQHLIVEQKLLHFV 900
Query: 901 DAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIAS 960
DAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIAS
Sbjct: 901 DAFHQYVMDRVYHSAWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIAS 960
Query: 961 RVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNV 1020
RVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNV
Sbjct: 961 RVKTILGLALDFHNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNV 1020
Query: 1021 GHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR 1055
GHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR
Sbjct: 1021 GHFPHLADLVTRINYNHYYMSDSGSFSAIPGSRPR 1055
>Os02g0523300 Spc97/Spc98 family protein
Length = 1029
Score = 2038 bits (5279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1029 (95%), Positives = 996/1029 (96%), Gaps = 23/1029 (2%)
Query: 50 MVLPQQNAGLMEADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFQVLQGFDT 109
MVLPQ NAGLMEADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVF+VLQGFDT
Sbjct: 1 MVLPQLNAGLMEADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFEVLQGFDT 60
Query: 110 VLLYWDKTAPGYCEKAGVYVSHLSQTSLRAVLKPFLFAATWLKQVELFVGR--------- 160
VLLYWDKTAPGYCEKAG+YVSHLSQTSLRAVLKPFLFAAT LKQVELFVGR
Sbjct: 61 VLLYWDKTAPGYCEKAGIYVSHLSQTSLRAVLKPFLFAATCLKQVELFVGRVRSCGHGTP 120
Query: 161 --------------RLRKAALKEEEQLFLSVDRTITLLGLTDSMSSLCSGAEHLYQVVQG 206
RLRKAALKEEEQLFLSV+RTITLLGLTDSMSSLCSGAEHLYQVVQG
Sbjct: 121 TLSAFASSVDSWLMRLRKAALKEEEQLFLSVERTITLLGLTDSMSSLCSGAEHLYQVVQG 180
Query: 207 AVPDAFWNSGAQIASSEVAVHAVNHLFKKLNEVCLVEDGEGEPYHMLLVIFAETLLPYLQ 266
AVPDAFWNSGAQ+ASSEVAVHAVNHLFKKLNEVCLVEDGEGEPYHMLLVIFA TLLPYLQ
Sbjct: 181 AVPDAFWNSGAQMASSEVAVHAVNHLFKKLNEVCLVEDGEGEPYHMLLVIFAGTLLPYLQ 240
Query: 267 CLDSWLYDGILDDPYEEMFFYANKAVTIDQPAFWEMSYMLRVRGPRTDSSSTLADNESIR 326
CLDSWLYDGILDDP EEMFFYANKAVTIDQPAFWEMSYMLRVRGPRTDSSSTLADNESIR
Sbjct: 241 CLDSWLYDGILDDPNEEMFFYANKAVTIDQPAFWEMSYMLRVRGPRTDSSSTLADNESIR 300
Query: 327 KKELINQEATAAAALLKSSNQGCADILCPVFLKDIARAILSAGKSFQLVQHVQETHRIQT 386
KKELINQE TAAAALLKSSNQGCADILCPVFLKDIARAILSAGKSFQLVQHVQETHRIQT
Sbjct: 301 KKELINQETTAAAALLKSSNQGCADILCPVFLKDIARAILSAGKSFQLVQHVQETHRIQT 360
Query: 387 REVVHEFNVDQHGNYISQQKFRPDTSSIRIQDKREDIIEESAGQFGNNACKMGFLTLSES 446
REV+HEFN+DQHGNYISQQKFRPDTSSIRIQDKREDIIEES GQFGNNACKM FLTLSES
Sbjct: 361 REVIHEFNIDQHGNYISQQKFRPDTSSIRIQDKREDIIEESTGQFGNNACKMDFLTLSES 420
Query: 447 FLICLSGLLENGDHVDDYLRKLCADHAPVNKSIVHSKSNVQETEEVCGENSSEKTWLKLL 506
FLICLSGLLENGDHVDDYLRKLCAD+APVNK+IVHSKSNVQETEEVCGENSSEKTWLKLL
Sbjct: 421 FLICLSGLLENGDHVDDYLRKLCADNAPVNKTIVHSKSNVQETEEVCGENSSEKTWLKLL 480
Query: 507 RDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQDVSSTAVESHFNLSCYENPGITACQEI 566
RDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQDVSST VES+FNLSCYENPGITACQE+
Sbjct: 481 RDATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQDVSSTEVESYFNLSCYENPGITACQEM 540
Query: 567 LERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGTSPGDTLSTTYFPRLDGTDYK 626
LERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGT PGDTLSTTYFPRLDGTDYK
Sbjct: 541 LERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGTIPGDTLSTTYFPRLDGTDYK 600
Query: 627 FGFQFDDSEYIRQEDDRRTLESLYTFPTLLPCVNENVPLSEILPLQKDSTLASRALKFIQ 686
FGFQFDDSEYIRQEDDRRTLE+LYTFPTLLPCVNENVPLSEILPLQKDSTLASRALKFIQ
Sbjct: 601 FGFQFDDSEYIRQEDDRRTLEALYTFPTLLPCVNENVPLSEILPLQKDSTLASRALKFIQ 660
Query: 687 SMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQILSKLMGDWRLMDELFVLRAIYLLGSGD 746
SMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQILSKLMGDWRLMDELFVLRAIYLLGSGD
Sbjct: 661 SMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQILSKLMGDWRLMDELFVLRAIYLLGSGD 720
Query: 747 MLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVSLAKHDTRND 806
MLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVSLAKHDTRND
Sbjct: 721 MLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVSLAKHDTRND 780
Query: 807 EETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKF 866
EETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKF
Sbjct: 781 EETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKF 840
Query: 867 ILDKTRKWMWKGGGSTTHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASA 926
ILD+TRKWMWKGGGST HNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASA
Sbjct: 841 ILDETRKWMWKGGGSTMHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASA 900
Query: 927 TTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAP 986
TTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAP
Sbjct: 901 TTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNIEQTLGTGGTAP 960
Query: 987 AVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSF 1046
AVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSF
Sbjct: 961 AVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINYNHYYMSDSGSF 1020
Query: 1047 SAIPGSRPR 1055
SAIPGSRPR
Sbjct: 1021 SAIPGSRPR 1029
>Os09g0446200 Spc97/Spc98 family protein
Length = 544
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 31/256 (12%)
Query: 702 ECLSKCIKRQVDHIGKQILSKLMGDWRLMDELFVLRAIYLLGSGDMLQQFLVTIFDKLDK 761
+ L + I + ++ + +R D ++ LLG GD +Q + + +L +
Sbjct: 174 DALEALVVEAAKRIDRHLMDVIHKRYRFKDHCLAIKRYLLLGQGDFVQYLMDVVGPELSE 233
Query: 762 GNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVSLAKHDTRNDEETTSISRKGRAQGF 821
F L LL+ +IR S A++D R+ + + K G
Sbjct: 234 PANRISSFHLAGLLETAIRASN---------------AQYDDRDILDRIKV--KMMDHGD 276
Query: 822 GIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLKVKRAKFILDKTRKWM------ 875
G DV + Y PLD + +K+Y ++ FL K+KR L K M
Sbjct: 277 GDRGWDVFSLEYDARVPLDTVFTASVMKRYLKIFNFLWKLKRVDHSLTGIWKTMKPNCIV 336
Query: 876 ----WKGGGSTTHNFKQHL----IVEQKLLHFVDAFHQYVMDRVYHSAWTELCDGMASAT 927
+K G + F L ++ ++ HFV F Y+M V +W + M SA
Sbjct: 337 SSPFYKEGTNIRSQFVSVLRKCQVLFNEMNHFVTNFQYYIMFEVLEVSWARFSEEMDSAK 396
Query: 928 TLDEVMEVHEAYLSSI 943
LD+++ H+ YL+SI
Sbjct: 397 DLDDLLLAHDKYLTSI 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,549,412
Number of extensions: 1483061
Number of successful extensions: 3166
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3163
Number of HSP's successfully gapped: 4
Length of query: 1055
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 944
Effective length of database: 11,240,047
Effective search space: 10610604368
Effective search space used: 10610604368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)