Os02g0523300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spc97/Spc98 family protein.
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Os02g0523300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spc97/Spc98 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.38 | 0.196 | 11.4 | 0.0364 | 0.257 | -0.448 | -0.0309 | 0.081 | 0.268 | 4.33 | 1.047 | 10 | -- | -- |
| 17.4 | 0.194 | 11.4 | 0.0393 | 0.257 | -0.448 | -0.0581 | -- | 0.268 | 4.32 | 1.08 | 9 | -- | -- |
| 17.38 | 0.194 | 11.4 | 0.0361 | 0.257 | -0.446 | -- | 0.0898 | 0.268 | 4.32 | 1.08 | 9 | -- | -- |
| 17.41 | 0.194 | 11.4 | 0.0392 | 0.256 | -0.449 | -- | -- | 0.269 | 4.34 | 1.021 | 9 | -- | -- |
| 18.6 | 0.201 | 11.4 | 0.0438 | -- | -0.587 | -- | -0.0524 | 0.299 | -- | -0.0001419 | 169 | -- | -- |
| 20.18 | 0.211 | 11.4 | 0.0351 | 0.429 | -- | -0.0429 | -- | 0.269 | 2.31 | -- | -- | -- | -- |
| 20.18 | 0.21 | 11.4 | 0.0363 | 0.429 | -- | -- | -- | 0.269 | 2.31 | -- | -- | -- | -- |
| 18.6 | 0.201 | 11.4 | 0.0514 | -- | -0.585 | -- | -- | 0.302 | -- | -1.605 | 169 | -- | -- |
| 17.45 | 0.195 | 11.4 | -- | 0.258 | -0.446 | -- | -- | 0.268 | 4.32 | 1.02 | 9 | -- | -- |
| 31.12 | 0.261 | 11.4 | 0.0544 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 20.22 | 0.21 | 11.4 | -- | 0.43 | -- | -- | -- | 0.265 | 2.31 | -- | -- | -- | -- |
| 18.67 | 0.201 | 11.4 | -- | -- | -0.585 | -- | -- | 0.297 | -- | -3.025 | 169 | -- | -- |
| 31.2 | 0.261 | 11.4 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.49 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 2 | 16.54 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 3 | 16.55 | radiation | 30 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 6 | 16.63 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 9 | 16.74 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 67 | 16.95 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 87 | 16.95 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 91 | 17.00 | radiation | 40 | 10 | < th | dose independent | rect. | 1 | 23 |
| 134 | 17.07 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 135 | 17.09 | radiation | 10 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 186 | 17.23 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 194 | 17.25 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 195 | 17.26 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 196 | 17.27 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 212 | 17.29 | radiation | 1 | 90 | > th | dose dependent | sin | 1 | NA |
| 215 | 17.29 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 222 | 17.30 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 289 | 17.36 | radiation | 1 | 10 | > th | dose dependent | sin | 1 | NA |
| 294 | 17.37 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 309 | 17.38 | radiation | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 311 | 17.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 344 | 17.41 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 23 |
| 357 | 17.42 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 396 | 17.43 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 402 | 17.44 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 403 | 17.44 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 575 | 17.45 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 594 | 17.46 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 13 |
| 617 | 17.47 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 628 | 17.47 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 14 |
| 676 | 17.48 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 727 | 17.50 | radiation | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 743 | 17.50 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 798 | 17.52 | radiation | 20 | 90 | < th | dose independent | sin | 2 | NA |
| 799 | 17.52 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 15 |