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Os09g0446200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Spc97/Spc98 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.34 (0.0182) R2 : 0.38
β1 : 1.1 (0.0665) R2dD : 0.388 R2D : 0.377
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0445 (0.0388) R2dN8 : 0.0024 R2N8 : -0.00836
σ : 0.341
deviance : 53.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.04 0.308 9.33 1.15 0.479 0.64 0.0708 0.694 0.142 15.8 30.4 277 -- --
43.36 0.307 9.32 1.27 0.461 0.63 -0.123 -- 0.167 15.9 30.88 321 -- --
43.05 0.306 9.33 1.16 0.478 0.639 -- 0.661 0.143 15.8 30.4 281 -- --
43.39 0.307 9.32 1.27 0.466 0.649 -- -- 0.172 15.9 30.9 321 -- --
47.1 0.32 9.32 1.22 -- 0.599 -- 0.271 0.14 -- 32.8 1121 -- --
48.42 0.326 9.34 1.12 0.285 -- -0.234 -- 0.0533 15 -- -- -- --
48.59 0.326 9.34 1.12 0.286 -- -- -- 0.052 15.1 -- -- -- --
47.19 0.32 9.32 1.28 -- 0.6 -- -- 0.149 -- 45.32 1110 -- --
81.35 0.42 9.37 -- 0.28 0.0683 -- -- -0.0682 15.3 57.3 396 -- --
53.24 0.341 9.34 1.1 -- -- -- -- 0.0445 -- -- -- -- --
81.4 0.422 9.37 -- 0.264 -- -- -- -0.0723 15.1 -- -- -- --
84.45 0.428 9.38 -- -- -0.246 -- -- -0.105 -- 86.29 46 -- --
85.37 0.431 9.37 -- -- -- -- -- -0.0779 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.47 temperature 20.0 270 > th dose dependent rect. 1 10
5 39.99 temperature 30.0 90 < th dose dependent rect. 5 12
23 40.97 temperature 20.0 90 > th dose dependent sin 4 NA
27 41.03 temperature 30.0 720 < th dose dependent rect. 5 2
41 41.20 temperature 30.0 270 < th dose dependent rect. 3 12
44 41.24 precipitation 0.1 43200 > th dose dependent rect. 17 1
47 41.27 humidity 60.0 14400 < th dose independent rect. 17 1
51 41.38 temperature 10.0 270 > th dose dependent sin 5 NA
65 41.49 temperature 25.0 270 > th dose dependent rect. 7 4
91 41.62 radiation 40.0 1440 > th dose dependent rect. 12 1
96 41.63 temperature 10.0 720 > th dose dependent rect. 1 3
98 41.64 humidity 60.0 14400 > th dose independent rect. 17 2
111 41.64 temperature 10.0 720 > th dose dependent rect. 23 14
115 41.65 temperature 20.0 270 > th dose dependent rect. 16 21
119 41.68 temperature 30.0 270 < th dose dependent sin 5 NA
125 41.70 temperature 10.0 270 > th dose dependent rect. 7 13
127 41.71 temperature 30.0 90 < th dose dependent rect. 5 6
137 41.74 temperature 25.0 270 > th dose dependent rect. 7 2
162 41.81 humidity 60.0 14400 > th dose independent rect. 17 7
163 41.81 humidity 60.0 14400 > th dose independent rect. 17 9
166 41.81 humidity 60.0 14400 > th dose independent rect. 17 14
169 41.82 precipitation 0.1 43200 > th dose independent rect. 17 1
178 41.83 temperature 10.0 720 > th dose dependent rect. 17 18
179 41.84 humidity 80.0 4320 < th dose dependent rect. 18 2
195 41.87 radiation 1.0 43200 < th dose dependent rect. 20 5
198 41.88 precipitation 0.1 43200 < th dose independent rect. 17 1
201 41.88 precipitation 0.1 43200 < th dose dependent rect. 17 1
202 41.88 temperature 20.0 720 > th dose dependent rect. 1 4
212 41.90 humidity 80.0 4320 < th dose dependent rect. 18 5
280 42.03 temperature 10.0 720 > th dose dependent rect. 23 5
302 42.08 temperature 20.0 30 > th dose dependent rect. 3 19
303 42.09 radiation 1.0 43200 < th dose dependent rect. 20 7
320 42.12 temperature 10.0 30 > th dose dependent rect. 1 23
321 42.13 temperature 25.0 270 > th dose independent rect. 1 10
324 42.13 radiation 1.0 43200 < th dose dependent rect. 20 1
354 42.18 atmosphere 1000.0 43200 > th dose independent rect. 22 1
355 42.18 atmosphere 1000.0 43200 < th dose independent rect. 23 1
357 42.18 temperature 30.0 4320 < th dose independent rect. 6 3
360 42.18 temperature 15.0 10 > th dose dependent rect. 8 14
373 42.20 precipitation 0.1 14400 > th dose dependent rect. 20 22
374 42.21 humidity 80.0 4320 < th dose independent rect. 19 1
398 42.24 temperature 30.0 4320 < th dose independent rect. 21 12
407 42.25 temperature 25.0 270 > th dose independent rect. 6 5
408 42.25 temperature 15.0 720 > th dose dependent rect. 8 3
409 42.25 temperature 20.0 30 > th dose dependent rect. 3 17
410 42.26 temperature 25.0 720 < th dose independent rect. 5 3
412 42.26 temperature 30.0 4320 < th dose independent rect. 24 9
416 42.26 precipitation 0.1 43200 > th dose dependent rect. 17 4
423 42.27 temperature 30.0 4320 > th dose independent rect. 8 2
440 42.27 precipitation 0.1 14400 > th dose dependent rect. 17 7
454 42.28 precipitation 0.1 14400 > th dose dependent rect. 17 10
467 42.30 temperature 30.0 4320 < th dose independent rect. 3 6
470 42.30 temperature 25.0 270 < th dose independent rect. 4 11
491 42.32 temperature 25.0 720 < th dose independent rect. 7 1
509 42.34 atmosphere 1000.0 43200 > th dose independent rect. 11 1
514 42.35 atmosphere 1000.0 43200 < th dose independent rect. 11 1
519 42.36 temperature 30.0 4320 > th dose dependent rect. 8 2
541 42.37 humidity 60.0 4320 > th dose independent rect. 11 3
546 42.37 temperature 15.0 30 > th dose dependent rect. 8 12
558 42.38 temperature 30.0 270 < th dose dependent rect. 21 19
572 42.40 precipitation 0.1 43200 > th dose dependent rect. 20 1
626 42.45 humidity 60.0 4320 < th dose independent rect. 13 1
627 42.45 precipitation 0.1 14400 < th dose independent rect. 17 6
629 42.45 humidity 50.0 4320 > th dose dependent rect. 21 1
630 42.45 precipitation 0.1 14400 < th dose dependent rect. 17 6
638 42.45 temperature 25.0 90 > th dose dependent rect. 21 16
647 42.46 precipitation 0.1 14400 > th dose independent rect. 17 6
650 42.46 humidity 60.0 14400 < th dose dependent rect. 17 1
652 42.46 temperature 10.0 720 > th dose dependent rect. 7 6
684 42.49 temperature 25.0 270 > th dose independent rect. 1 19
706 42.50 temperature 15.0 90 > th dose dependent rect. 7 22
719 42.52 precipitation 0.1 4320 > th dose independent rect. 16 2
730 42.52 temperature 25.0 270 > th dose independent rect. 6 14
741 42.52 temperature 30.0 30 < th dose dependent rect. 5 22
756 42.54 wind 9.0 43200 > th dose dependent rect. 20 1
771 42.55 atmosphere 1000.0 43200 < th dose independent rect. 4 9
783 42.56 atmosphere 1000.0 43200 > th dose independent rect. 4 9
784 42.56 atmosphere 1000.0 43200 < th dose independent rect. 21 16
787 42.56 wind 9.0 43200 > th dose dependent rect. 17 4
788 42.56 precipitation 0.1 4320 > th dose dependent rect. 6 12
789 42.56 humidity 60.0 14400 < th dose dependent rect. 17 16
793 42.57 precipitation 0.1 4320 < th dose independent rect. 16 2
802 42.57 precipitation 0.1 4320 < th dose dependent rect. 16 2
819 42.58 atmosphere 1000.0 43200 > th dose independent rect. 21 16
834 42.59 atmosphere 1000.0 43200 > th dose independent rect. 5 1
836 42.59 atmosphere 1000.0 43200 < th dose independent rect. 5 1
859 42.59 temperature 30.0 720 < th dose dependent rect. 20 14
867 42.60 atmosphere 1000.0 43200 < th dose independent rect. 4 3
891 42.61 atmosphere 1000.0 43200 > th dose independent rect. 4 3
915 42.61 precipitation 0.1 4320 > th dose dependent rect. 8 10
949 42.62 humidity 80.0 4320 < th dose dependent rect. 17 13