BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0446200 Os09g0446200|011-092-H04
(544 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06680.1 | chr5:2056741-2059369 FORWARD LENGTH=839 744 0.0
AT5G17410.2 | chr5:5730651-5736415 FORWARD LENGTH=680 112 4e-25
AT3G53760.1 | chr3:19918182-19922264 REVERSE LENGTH=746 86 4e-17
AT3G43610.1 | chr3:15517772-15523927 REVERSE LENGTH=1208 69 5e-12
>AT5G06680.1 | chr5:2056741-2059369 FORWARD LENGTH=839
Length = 838
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/543 (67%), Positives = 424/543 (78%), Gaps = 2/543 (0%)
Query: 1 DSGVSGNYLSLRRLAVWLAEPAVRMRLMAVLVDGCRGLRXXXXXXXXXXXXXXXDPTFQD 60
+S S NYLSLRRL+VW AEP V+MRLMAVLVD C+ LR DP D
Sbjct: 297 ESASSNNYLSLRRLSVWFAEPMVKMRLMAVLVDKCKVLRGGAMAGAIHLHAQHGDPLVHD 356
Query: 61 FMGRLLRRVCSPLFEMVRSWVLEGELEDVFAEFFIVGQPVKAESLWQEGYLLQSDMLPAF 120
FM LLR VCSPLFEMVRSWVLEGELED F EFF+VGQPVK + LW+EGY L MLP+F
Sbjct: 357 FMMSLLRCVCSPLFEMVRSWVLEGELEDTFGEFFVVGQPVKVDLLWREGYKLHPAMLPSF 416
Query: 121 ISPVLAQRILRTGKSINFLKVCCDDNGWADAATEAAVCVGTTTSRGGLGYGQIDALEALV 180
ISP LAQRILRTGKSINFL+VCCDD+GWADAA+EAA GTTT RGGLGYG+ DALE LV
Sbjct: 417 ISPSLAQRILRTGKSINFLRVCCDDHGWADAASEAAAASGTTTRRGGLGYGETDALEHLV 476
Query: 181 VEAAKRIDRHLMDVIHKRYRFKDHCLAIKRYLLLGQGDFVQYLMDVVGPELSEPANRISS 240
EAAKRID+HL+DV++KRY+FK+HCLAIKRYLLLGQGDFVQYLMD+VGP+LSEPAN ISS
Sbjct: 477 TEAAKRIDKHLLDVLYKRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPKLSEPANNISS 536
Query: 241 FHLAGLLETAIRASNAQYDDRDILDRIKVKMMDHGDGDRGWDVFSLEYDARVPLDTVFTA 300
F LAG LE AIRASNAQYDDRD+LDR++VKMM HG GDRGWDVFSLEY+ARVPLDTVFT
Sbjct: 537 FELAGFLEAAIRASNAQYDDRDMLDRLRVKMMPHGSGDRGWDVFSLEYEARVPLDTVFTE 596
Query: 301 SVMKRYLKIFNFLWKLKRVDHSLTGIWKTMKPNCIVSSPFYKEGTNIRSQFVSVLRKCQV 360
SV+ +YL++FNFLWKLKRV+H+L GIWKTMKPNCI S+ F K ++++ Q +S LR+CQV
Sbjct: 597 SVLSKYLRVFNFLWKLKRVEHALIGIWKTMKPNCITSNSFVKLQSSVKLQLLSALRRCQV 656
Query: 361 LFNEMNHFVTNFQYYIMFEVLEVSWARFSEEMXXXXXXXXXXXXXXXXXTSIVEKSLLGE 420
L+NEMNHFVTNFQYYIMFEVLEVSW+ FS+EM +IV KSLLGE
Sbjct: 657 LWNEMNHFVTNFQYYIMFEVLEVSWSNFSKEMEAAKDLDDLLAAHEKYLNAIVGKSLLGE 716
Query: 421 RSHGILRNLFALFDIILQFRSHADRWFERIYELQLRXXXXXXXXXXXXXXEVDSWVDGGR 480
+S I +LF LF++IL+FRSHADR +E I+ELQ+R E SW+ GR
Sbjct: 717 QSQTIRESLFVLFELILRFRSHADRLYEGIHELQIR--SKESGREKNKSQEPGSWISEGR 774
Query: 481 KAMIQLAGELFRKMGEDLDSIAKDYTSSLDAFIAQLPMQQHVDLKFLLFRLDFTEYYSRV 540
K + Q AGE + M +D+DSIAK+YTSSLD F++ LP+QQ VDLKFL FRLDFTE+YSR+
Sbjct: 775 KGLTQRAGEFLQSMSQDMDSIAKEYTSSLDGFLSLLPLQQSVDLKFLFFRLDFTEFYSRL 834
Query: 541 SSN 543
S
Sbjct: 835 HSK 837
>AT5G17410.2 | chr5:5730651-5736415 FORWARD LENGTH=680
Length = 679
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 166/357 (46%), Gaps = 51/357 (14%)
Query: 55 DPTFQDFMGRLLRRVCSPLFEMVRSWVLEGELEDVFAEFFIV-GQPVKAESL-------- 105
D + + + ++ + ++ WV EG ++D + EFFI + +K ESL
Sbjct: 221 DNSVRSLLEKMTECASNAYLSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKY 280
Query: 106 WQEGYLLQSDMLPAFISPVLAQRILRTGKSINFLKVCCDDNGWADAATEAAVCVGTTTSR 165
W + Y L+ D +P F++ + A IL TGK +N ++ C + + + + +
Sbjct: 281 WSQRYSLK-DTIPGFLANI-AATILTTGKYLNVMRECGHN-------VQVPISERSKLTI 331
Query: 166 GGLGYGQIDALEALVVEAAKRIDRHLMDVIHKRYRFKDHCLAIKRYLLLGQGDFVQYLMD 225
G + ++ ++A A + L+++I +Y +IK YLLL QGDF+ + MD
Sbjct: 332 FGSNHHYLECIKA----AHEFASIELVNLIKDKYDLVGRLRSIKHYLLLDQGDFLVHFMD 387
Query: 226 VVGPELSEPANRISSFHLAGLLETAIRASNAQYDDRD-----ILDRIKV--KMMDHGDGD 278
+ EL++ + IS L LL+ A+R + A D R +DR + + H D D
Sbjct: 388 IAREELNKKVHEISVEKLQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKDTD 447
Query: 279 R----------GWDVFSLEYDARVPLDTVFTASVMKRYLKIFNFLWKLKRVDHSLTGIWK 328
G + FSL Y + PL V + + +Y IF FL+ K V+ L G W+
Sbjct: 448 SNSIEDPMSITGLETFSLSYKVQWPLSIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQ 507
Query: 329 TMKPNCIVSSPFYKEGTNIRSQFVSVLRKCQVLFNEMNHFVTNFQYYIMFEVLEVSW 385
++ ++ S+ ++LR +L M F+++ +Y+ FEVLE +W
Sbjct: 508 -----------IHQGIRSMNSKGTAILRS-SLLCRSMLKFISSLLHYLTFEVLEPNW 552
>AT3G53760.1 | chr3:19918182-19922264 REVERSE LENGTH=746
Length = 745
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 158/423 (37%), Gaps = 96/423 (22%)
Query: 56 PTFQDFMGRLLRRVCSPLFEMVRSWVLEGELEDVFAEFFIVGQ----------------- 98
P + + RLL ++ + +W++ G L+D EFFI Q
Sbjct: 194 PELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEVSEK 253
Query: 99 ----PVKAESL--WQEGYLLQSDMLPAFISPVLAQRILRTGKSINFLKVCCDDNGWADAA 152
V SL W G+ + DMLP +I L + IL GK+I L+ +
Sbjct: 254 LARTSVHETSLTDWHSGFHISLDMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQKDK 313
Query: 153 TEAAVCVGTTTSRGG---------------------LGYGQIDALEALV----------- 180
+ G+ RG L + D +EA++
Sbjct: 314 SFQQTMRGSQRIRGFMHSDFPETETELDADLTGGELLPQSEADKIEAMLKDLKESSEFHK 373
Query: 181 ------VEAAKRID-RHLMDVIHKRYRFKDHCLAIKRYLLLGQGDFVQ-------YLMDV 226
V++ + I HL ++ R H A+K Y LL +GDF Q LM +
Sbjct: 374 RSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRL 433
Query: 227 VGPELSEPANRISSFHLAGLLETAIRASNAQYDDRDIL--------------DRIKVKMM 272
+ + ++ + F LA T A +Y R L D ++ K+
Sbjct: 434 PPRQSTGESDLMVPFQLAA---TKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490
Query: 273 DHGDGD-------RGWDVFSLEYDARVPLDTVFTASVMKRYLKIFNFLWKLKRVDHSLTG 325
G + GWD +LEY P+ FT V+ +YLK+F +L +LKR L
Sbjct: 491 LTGKANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEK 550
Query: 326 IWKT-MKPNCIVSSPFYKEGTN--IRSQFVSVLRKCQVLFNEMNHFVTNFQYYIMFEVLE 382
W + M + I S+ K+G N Q +R + M + N Q+YI +V+E
Sbjct: 551 SWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIE 610
Query: 383 VSW 385
W
Sbjct: 611 SQW 613
>AT3G43610.1 | chr3:15517772-15523927 REVERSE LENGTH=1208
Length = 1207
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 34/228 (14%)
Query: 187 IDRHLMDVIHKRYRF---------------KDHCLAIKRYLLLGQGDFVQYLMDVVGPE- 230
ID+ L+ IH +Y F ++H LA++RY + D+ + +
Sbjct: 850 IDKCLLQEIHLQYNFVSKLAIKLLEEGFGLQEHLLALRRYHFMELADWADVFVVSLWHHK 909
Query: 231 --LSEPANRISSFHLAGLLETAIRASNAQYDDRDIL-DRI-------KVKMMDHGDGDRG 280
++E RI+ + G LE++I+ S+ + RDI DRI + + G R
Sbjct: 910 WLVTEADKRIA--EIQGFLESSIQRSSCE---RDICKDRIFLYKRQGTMHIPPSTIGVRS 964
Query: 281 WDVFSLEYDARVPLDTVFTASVMKRYLKIFNFLWKLKRVDHSLTGIWKTMKPNCIVSSPF 340
+D L Y P+ + T + Y +F+FL ++K + LT +W ++K V
Sbjct: 965 FDFLRLGYRVDWPISIILTCDALTAYADVFSFLVQVKLAAYVLTDVWCSLKD---VRHMM 1021
Query: 341 YKEGTNIRSQFVSVLRKCQVLFNEMNHFVTNFQYYIMFEVLEVSWARF 388
+++ I Q + L L +++NHFVT Q Y+ E+ VSW++F
Sbjct: 1022 HEKKEKILKQELRWLNILMKLRHQVNHFVTALQQYVHSELSHVSWSKF 1069
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,400,042
Number of extensions: 388794
Number of successful extensions: 986
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 4
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)