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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0606100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Spc97/Spc98 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0387) R2 : 0.125
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.89 (0.531) R2dE : 0.104 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.238 (0.0815) R2dN8 : 0.0213 R2N8 : 0.0216
σ : 0.726
deviance : 243.04
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.776
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.01
open length of G : 0.892

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.13 0.716 2.9 0.0528 0.102 3.3 0.526 -9.35 -0.225 5.58 2.308 10 1.21 0.786
242.22 0.725 2.89 0.0796 0.0825 3.57 0.332 -- -0.223 5.44 1.794 12 1 0.883
231.59 0.714 2.91 0.0458 0.112 3.42 -- -9.29 -0.229 6.52 2.308 10 1.21 0.786
242.27 0.725 2.9 0.0828 0.099 3.92 -- -- -0.233 5.89 1.749 12 1 0.883
232.24 0.714 2.91 0.048 -- 3.45 -- -9.29 -0.227 -- 2.308 10 1.21 0.786
269.44 0.77 2.9 0.0999 0.175 -- 0.337 -- -0.267 4.79 -- -- -- --
269.73 0.769 2.9 0.0982 0.177 -- -- -- -0.268 4.5 -- -- -- --
242.81 0.726 2.9 0.0914 -- 3.9 -- -- -0.229 -- 1.771 12 1 0.9
242.47 0.725 2.9 -- 0.108 3.89 -- -- -0.239 5.93 1.76 12 1 0.883
271.39 0.77 2.9 0.105 -- -- -- -- -0.264 -- -- -- -- --
269.98 0.769 2.91 -- 0.178 -- -- -- -0.279 4.49 -- -- -- --
243.04 0.726 2.9 -- -- 3.89 -- -- -0.238 -- 1.776 12 1.01 0.892
271.69 0.769 2.91 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.52 wind 1 30 < th dose independent rect. 24 2
6 238.13 wind 3 10 < th dose dependent rect. 1 1
8 238.91 wind 1 10 < th dose independent rect. 15 11
9 238.92 wind 1 10 < th dose independent rect. 17 9
16 239.23 wind 1 10 < th dose independent rect. 11 15
20 240.50 wind 1 90 < th dose dependent rect. 1 1
30 245.38 wind 1 10 < th dose dependent rect. 15 11
38 245.76 wind 1 10 < th dose dependent rect. 11 15
45 246.80 wind 7 1440 > th dose dependent rect. 1 2
46 246.81 wind 7 1440 > th dose independent rect. 1 2
77 248.78 wind 1 10 < th dose independent rect. 7 19
90 250.79 wind 1 10 < th dose dependent rect. 7 19
109 252.14 wind 5 90 > th dose dependent rect. 3 5
111 252.48 temperature 20 30 > th dose dependent rect. 1 1
113 252.63 wind 5 90 > th dose independent rect. 5 2
114 252.63 wind 5 90 > th dose dependent rect. 4 3
120 252.72 radiation 20 90 > th dose independent rect. 6 1
134 252.72 radiation 20 90 > th dose dependent rect. 6 1
148 252.88 wind 5 90 > th dose independent rect. 3 5
164 253.36 humidity 80 90 < th dose dependent rect. 7 1
179 254.22 wind 1 10 < th dose dependent sin 17 NA
187 254.87 wind 3 270 < th dose dependent rect. 22 1
208 255.42 wind 5 30 > th dose dependent rect. 1 7
227 255.90 wind 1 270 < th dose dependent rect. 16 10
234 255.95 wind 1 270 < th dose dependent rect. 20 6
260 256.55 wind 1 10 < th dose independent sin 17 NA
263 256.59 wind 3 10 > th dose dependent rect. 21 1
289 256.99 wind 5 30 > th dose independent rect. 1 7
292 257.04 wind 5 10 > th dose independent rect. 21 2
296 257.12 humidity 80 90 < th dose dependent rect. 21 1
301 257.15 radiation 10 720 < th dose independent rect. 17 8
302 257.16 humidity 80 10 < th dose dependent rect. 22 1
341 257.72 humidity 90 10 > th dose independent rect. 24 2
351 257.90 humidity 80 30 < th dose independent rect. 21 1
388 258.46 humidity 80 30 < th dose dependent rect. 21 11
423 258.79 temperature 20 30 > th dose independent rect. 1 1
432 258.93 wind 5 90 > th dose independent rect. 21 1
446 259.07 radiation 40 1440 < th dose dependent rect. 18 12
453 259.17 radiation 40 1440 < th dose dependent rect. 23 7
454 259.17 radiation 30 720 < th dose dependent rect. 17 8
455 259.18 radiation 40 1440 < th dose dependent rect. 4 2
462 259.21 humidity 50 30 < th dose dependent rect. 17 20
468 259.29 wind 1 270 < th dose independent rect. 22 1
469 259.29 humidity 50 30 < th dose independent rect. 17 20
518 259.51 humidity 50 30 < th dose dependent rect. 17 1
537 259.52 wind 1 10 > th dose independent sin 18 NA
547 259.58 radiation 10 30 > th dose dependent rect. 17 1
561 259.59 radiation 10 30 > th dose independent rect. 17 1
575 259.60 humidity 50 30 < th dose independent rect. 17 1
600 259.67 radiation 1 720 > th dose dependent rect. 16 15
625 259.78 temperature 25 4320 > th dose dependent rect. 10 1
657 260.00 temperature 25 4320 > th dose independent rect. 20 1
659 260.01 radiation 1 1440 > th dose dependent rect. 18 12
665 260.06 temperature 25 4320 > th dose dependent rect. 20 1
672 260.10 radiation 1 1440 > th dose dependent rect. 4 2
694 260.17 temperature 25 4320 > th dose dependent rect. 3 9
697 260.19 humidity 50 720 > th dose independent rect. 17 8
706 260.22 temperature 25 4320 > th dose dependent rect. 19 17
707 260.23 temperature 25 4320 > th dose dependent rect. 6 6
723 260.30 temperature 25 4320 < th dose independent rect. 20 1
729 260.34 temperature 25 4320 > th dose independent rect. 19 4
765 260.45 radiation 40 4320 > th dose dependent rect. 13 21
804 260.56 temperature 25 4320 < th dose independent rect. 18 5
807 260.57 temperature 25 4320 < th dose independent rect. 22 1
819 260.59 radiation 40 4320 > th dose independent rect. 14 19
826 260.60 humidity 80 10 > th dose dependent rect. 1 1
830 260.61 temperature 25 1440 > th dose independent rect. 6 1
848 260.64 radiation 40 4320 < th dose independent rect. 14 19
869 260.70 temperature 30 4320 > th dose independent rect. 10 1
870 260.70 temperature 25 1440 < th dose independent rect. 6 1
872 260.70 temperature 25 4320 > th dose dependent sin 8 NA
892 260.78 temperature 25 4320 > th dose independent rect. 22 1
903 260.81 temperature 20 10 < th dose dependent rect. 22 1
905 260.81 radiation 40 4320 > th dose dependent rect. 13 2
926 260.82 temperature 30 4320 < th dose independent rect. 10 1
931 260.84 temperature 30 1440 > th dose independent rect. 16 1
932 260.84 radiation 10 14400 > th dose independent rect. 17 1
951 260.86 temperature 30 1440 < th dose independent rect. 16 1
979 260.91 radiation 40 4320 > th dose dependent sin 12 NA
999 260.95 radiation 40 1440 < th dose independent rect. 18 15
1000 260.95 radiation 20 90 > th dose independent rect. 16 16