BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0597800 Os12g0597800|AK108042
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0597800  HAT dimerisation domain containing protein          242   4e-65
Os02g0236500  Zinc finger, TTF-type domain containing protein     176   4e-45
Os11g0628800  HAT dimerisation domain containing protein          113   4e-26
Os10g0417400                                                       94   3e-20

>Os12g0597800 HAT dimerisation domain containing protein
          Length = 122

 Score =  242 bits (618), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   SSTSSNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTV 60
           SSTSSNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTV
Sbjct: 1   SSTSSNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTV 60

Query: 61  ASAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARRSI 120
           ASAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARRSI
Sbjct: 61  ASAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARRSI 120

Query: 121 FS 122
           FS
Sbjct: 121 FS 122



>Os02g0236500 Zinc finger, TTF-type domain containing protein
          Length = 918

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 102/120 (85%)

Query: 2   STSSNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTVA 61
           + SS+VE+NDF+SELKVLQ +L D+  SAP IL+F   AD Y NV VAYRILLTV VTVA
Sbjct: 798 NNSSDVELNDFFSELKVLQATLPDALKSAPEILEFITAADCYPNVLVAYRILLTVPVTVA 857

Query: 62  SAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARRSIF 121
           S ERSFSKLKLLKNYLRST SQERLNGL MC I+K++L+ IDL+TV++DFASRNARRSIF
Sbjct: 858 STERSFSKLKLLKNYLRSTMSQERLNGLAMCCIEKNVLENIDLDTVINDFASRNARRSIF 917



>Os11g0628800 HAT dimerisation domain containing protein
          Length = 613

 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 79/114 (69%)

Query: 5   SNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTVASAE 64
           S+++ N+ Y+EL+ LQ  +   +M    ILKF    D + N S+AYRILLT+ VTVASAE
Sbjct: 495 SDIDANELYTELRFLQDFIPKENMGPLEILKFLKRHDCFPNASIAYRILLTIPVTVASAE 554

Query: 65  RSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARR 118
           RS SKLKLLK+YLR T +QERLN L M  ++  +L+ I+   +++DF S+N +R
Sbjct: 555 RSISKLKLLKSYLRCTMTQERLNSLAMIALENGLLEKINYEHIIEDFISKNTKR 608



>Os10g0417400 
          Length = 591

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 67/99 (67%)

Query: 6   NVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDADFYKNVSVAYRILLTVHVTVASAER 65
           +++  + + EL  LQ  +S   +    ILKF    D + N ++AYRILLT+ VT+ASAE 
Sbjct: 390 DIDATELHVELIFLQSFISQEKLGPVEILKFLKRHDCFPNATIAYRILLTIPVTIASAEW 449

Query: 66  SFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDL 104
           SFSKLKLLK+YLRST SQERLNGL +  ++  +L  I++
Sbjct: 450 SFSKLKLLKSYLRSTMSQERLNGLAIIALEGGMLGRINI 488



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,861,283
Number of extensions: 84534
Number of successful extensions: 268
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 4
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)