Os11g0628800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAT dimerisation domain containing protein.
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Os11g0628800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAT dimerisation domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.5 | 0.284 | 2.96 | 0.0136 | 0.102 | -0.177 | -0.0197 | -0.463 | 0.0114 | 10 | 20.8 | 231 | -- | -- |
| 36.93 | 0.283 | 2.95 | 0.126 | 0.105 | -0.156 | -0.0603 | -- | 0.0543 | 10.1 | 22.7 | 203 | -- | -- |
| 36.5 | 0.281 | 2.96 | 0.0127 | 0.104 | -0.176 | -- | -0.462 | 0.0111 | 10.1 | 20.84 | 222 | -- | -- |
| 36.88 | 0.283 | 2.95 | 0.119 | 0.119 | -0.158 | -- | -- | 0.0513 | 9.88 | 22.45 | 150 | -- | -- |
| 37.12 | 0.284 | 2.96 | 0.0102 | -- | -0.174 | -- | -0.46 | 0.0108 | -- | 20.83 | 251 | -- | -- |
| 38.37 | 0.29 | 2.96 | 0.0649 | 0.0995 | -- | -0.0342 | -- | -0.00151 | 8.72 | -- | -- | -- | -- |
| 38.37 | 0.29 | 2.96 | 0.0637 | 0.0999 | -- | -- | -- | -0.00159 | 8.61 | -- | -- | -- | -- |
| 37.62 | 0.286 | 2.95 | 0.12 | -- | -0.143 | -- | -- | 0.0539 | -- | 22.93 | 242 | -- | -- |
| 37.24 | 0.284 | 2.95 | -- | 0.116 | -0.14 | -- | -- | 0.0331 | 9.7 | 22.4 | 150 | -- | -- |
| 38.93 | 0.292 | 2.96 | 0.064 | -- | -- | -- | -- | -0.000706 | -- | -- | -- | -- | -- |
| 38.48 | 0.29 | 2.96 | -- | 0.1 | -- | -- | -- | -0.00868 | 8.56 | -- | -- | -- | -- |
| 37.74 | 0.286 | 2.95 | -- | -- | -0.148 | -- | -- | 0.0569 | -- | 23.7 | 686 | -- | -- |
| 39.04 | 0.292 | 2.96 | -- | -- | -- | -- | -- | -0.0078 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.51 | humidity | 60 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 2 | 31.52 | humidity | 60 | 10 | < th | dose independent | rect. | 16 | 18 |
| 9 | 31.75 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 35 | 31.75 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 87 | 31.79 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 90 | 31.79 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 104 | 31.79 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 106 | 31.80 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 108 | 31.80 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 109 | 31.80 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 234 | 31.86 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 326 | 32.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 350 | 32.14 | humidity | 60 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 351 | 32.16 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 368 | 32.22 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 390 | 32.25 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 393 | 32.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 602 | 32.70 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 604 | 32.71 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 654 | 32.89 | humidity | 60 | 30 | < th | dose independent | sin | 11 | NA |
| 655 | 32.89 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 796 | 33.25 | humidity | 60 | 10 | < th | dose dependent | sin | 11 | NA |
| 805 | 33.32 | humidity | 60 | 30 | > th | dose independent | sin | 11 | NA |
| 888 | 33.54 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 924 | 33.57 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 6 | 1 |