BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0595000 Os12g0595000|AK065252
(471 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0595000 EXS, C-terminal domain containing protein 877 0.0
Os02g0809800 SPX, N-terminal domain containing protein 126 3e-29
Os06g0493600 Similar to PHO1-like protein 112 6e-25
>Os12g0595000 EXS, C-terminal domain containing protein
Length = 471
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/454 (95%), Positives = 433/454 (95%)
Query: 18 RWRSGVVFLGFTHRRWRLRAQRLXXXXXXXXXMKGSAIPAVAIMPSPLFLWRFKVVLFLL 77
RWRSGVVFLGFTHRRWRLRAQRL MKGSAIPAVAIMPSPLFLWRFKVVLFLL
Sbjct: 18 RWRSGVVFLGFTHRRWRLRAQRLGGEGGGAGEMKGSAIPAVAIMPSPLFLWRFKVVLFLL 77
Query: 78 WGLCCCKIGWDSVMRMSADLRDLFLYEAFLYYNPLLLVALMIWLWGVNLWVFAQSSVNYA 137
WGLCCCKIGWDSVMRMSADLRDLFLYEAFLYYNPLLLVALMIWLWGVNLWVFAQSSVNYA
Sbjct: 78 WGLCCCKIGWDSVMRMSADLRDLFLYEAFLYYNPLLLVALMIWLWGVNLWVFAQSSVNYA 137
Query: 138 RVFDLAQTHLSHREIWRCATWLTLIVPTSMTAYLYLYSHGEVSLAASQPXXXXXXXXXXX 197
RVFDLAQTHLSHREIWRCATWLTLIVPTSMTAYLYLYSHGEVSLAASQP
Sbjct: 138 RVFDLAQTHLSHREIWRCATWLTLIVPTSMTAYLYLYSHGEVSLAASQPVLLYAILLIVL 197
Query: 198 XSPFDMFYLSSRFYFLRTVWRIMLPLQAITFPDFFLADIFTSMSKVFSDLERSVCRMVNR 257
SPFDMFYLSSRFYFLRTVWRIMLPLQAITFPDFFLADIFTSMSKVFSDLERSVCRMVNR
Sbjct: 198 LSPFDMFYLSSRFYFLRTVWRIMLPLQAITFPDFFLADIFTSMSKVFSDLERSVCRMVNR 257
Query: 258 QVATTAWLEADSICGSHSVAIPLVLVFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTAVP 317
QVATTAWLEADSICGSHSVAIPLVLVFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTAVP
Sbjct: 258 QVATTAWLEADSICGSHSVAIPLVLVFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTAVP 317
Query: 318 VIFLSALKYHVFPDKWVSFYRPLWLMSSVINSLYSFYWDIKRDWDLSILTRIFMFKNPST 377
VIFLSALKYHVFPDKWVSFYRPLWLMSSVINSLYSFYWDIKRDWDLSILTRIFMFKNPST
Sbjct: 318 VIFLSALKYHVFPDKWVSFYRPLWLMSSVINSLYSFYWDIKRDWDLSILTRIFMFKNPST 377
Query: 378 WTNLLYGQIWVYYWVLASNLVLRCTWTYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 437
WTNLLYGQIWVYYWVLASNLVLRCTWTYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV
Sbjct: 378 WTNLLYGQIWVYYWVLASNLVLRCTWTYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 437
Query: 438 ENEWNKMTAKQSLEMSSDMPSEGDRLLDSNSHTV 471
ENEWNKMTAKQSLEMSSDMPSEGDRLLDSNSHTV
Sbjct: 438 ENEWNKMTAKQSLEMSSDMPSEGDRLLDSNSHTV 471
>Os02g0809800 SPX, N-terminal domain containing protein
Length = 815
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 36/343 (10%)
Query: 114 LVALMIWLWGVNLWVFAQSSVNYARVFDLA-QTHLSHREIWRCATWLTLIVPTSMTAYLY 172
L++L I+L+G NL+++ + +N+ +FD + T L+HR+ + + + V ++ L+
Sbjct: 469 LISLHIFLYGCNLFMWKNTRINHNFIFDFSSNTALTHRDAFLMSASIMCTVVAALVINLF 528
Query: 173 LYSHGEVSLAASQPXXXXXXXXXXXXSPFDMFYLSSRFYFLRTVWRIML-PLQAITFPDF 231
L + G V+ A + P PFD+FY S+R+ F+R + I+ P + DF
Sbjct: 529 LKNAG-VAYANALPGALLLLSTGVLFCPFDIFYRSTRYCFMRVMRNIIFSPFYKVLMADF 587
Query: 232 FLADIFTSMSKVFSDLERSVCRMVNRQVATTAWLEADSICGSHSVAIPLVLVF-PYLCRL 290
F+AD TS + +E + C + T + S G + V+ F PY R
Sbjct: 588 FMADQLTSQIPLLRHMEFTACYFMAGSFRTHPYETCTS--GQQYKHLAYVISFLPYFWRA 645
Query: 291 FQCLRQY-KDTKEKTCLLNALKYSTAVPVIFLSALKYHVFPDKWVSFYRPLW----LMSS 345
QCLR+Y ++ + L NA KY +A + +A+++ K+ + P W ++SS
Sbjct: 646 LQCLRRYLEEGHDINQLANAGKYVSA---MVAAAVRF-----KYAATPTPFWVWMVIISS 697
Query: 346 VINSLYSFYWDIKRDWDLSILTRIFMFKNPSTWT-----NLLYGQIWVYYWVLASNLVLR 400
++Y YWD +DW F NP + L+ +YY + NL LR
Sbjct: 698 SGATIYQLYWDFVKDWG---------FLNPKSKNRWLRNELILKNKSIYYVSMMLNLALR 748
Query: 401 CTWTY---KLSAHLRHNYLTVFTIAALEILRRFQWVFFRVENE 440
WT K+ + L F++A+LEI+RR W F+R+ENE
Sbjct: 749 LAWTESVMKIHIGKVESRLLDFSLASLEIIRRGHWNFYRLENE 791
>Os06g0493600 Similar to PHO1-like protein
Length = 828
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 156/326 (47%), Gaps = 17/326 (5%)
Query: 122 WGVNLWVFAQSSVNYARVFDLAQT-HLSHREIWR-CATWLTLIVPTSMTAYLYLYSHGEV 179
+G N++++ ++ +NY +F+ T L +R+++ C T +T+++ M A+L L G
Sbjct: 489 YGCNIFMWRKTRINYTFIFEFTPTKELKYRDVFLICTTSMTIVIGV-MFAHLTLIVKGYS 547
Query: 180 SLAASQ-PXXXXXXXXXXXXSPFDMFYLSSRFYFLRTVWRIML-PLQAITFPDFFLADIF 237
S A P PF++ Y S R++FL + I+L P + DFF+AD
Sbjct: 548 SCAVQAIPGALLLVFLLILVCPFNILYRSCRYHFLTVIRNIILTPFYKVVMVDFFMADQL 607
Query: 238 TSMSKVFSDLERSVCRMVNRQVATTAWLEADSICGSHSVAIPLVLVFPYLCRLFQCLRQY 297
S + LE C + T + + +A V PY R QC R++
Sbjct: 608 CSQVPLLRSLEYLACYYITSSYKTQDYGYCTRVKHFRDLAYA-VSFLPYYWRAMQCARRW 666
Query: 298 KDTKEKTCLLNALKYSTAVPVIFLSALKYHVFPDKWVSFYRPLWLMSSVINSLYSFYWDI 357
D + ++N KY +A+ L+A + + + + L ++ S + ++Y YWD
Sbjct: 667 FDEGDINHIVNLGKYVSAM----LAAGTKVAYENDNSAGWLSLVVIVSSLATIYQLYWDF 722
Query: 358 KRDWDLSILTRIFMFKNPSTWTNLLYGQIWVYYWVLASNLVLRCTWTYKL---SAHLRHN 414
+DW L F KNP +L+ Q ++Y+ + NL+LR W + + +
Sbjct: 723 VKDWGL----LQFNSKNPWLRNDLILKQKYIYFLSMGLNLILRLAWLQTVIHPNIGSLDS 778
Query: 415 YLTVFTIAALEILRRFQWVFFRVENE 440
+T+F +AALE++RR W F+R+ENE
Sbjct: 779 RVTLFILAALEVIRRGHWNFYRLENE 804
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.139 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,296,296
Number of extensions: 511728
Number of successful extensions: 1231
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 3
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 158 (65.5 bits)