Os02g0809800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPX, N-terminal domain containing protein.
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Os02g0809800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SPX, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 326.33 | 0.849 | 7.82 | 0.171 | 4.59 | 2.36 | -1.09 | 3.69 | 0.96 | 8.12 | 13.19 | 22033 | -- | -- |
| 338.86 | 0.857 | 7.85 | 0.19 | 4.53 | 2.44 | -1.15 | -- | 1.02 | 8.04 | 21.85 | 24304 | -- | -- |
| 325.48 | 0.84 | 7.79 | 0.0589 | 4.6 | 2.47 | -- | 3.57 | 0.997 | 8.09 | 14.03 | 23398 | -- | -- |
| 337.91 | 0.856 | 7.81 | 0.394 | 4.58 | 2.7 | -- | -- | 1.15 | 7.94 | 21.85 | 24228 | -- | -- |
| 1462.31 | 1.78 | 7.95 | 0.241 | -- | 2.66 | -- | 3.73 | 1.09 | -- | 20.02 | 9455 | -- | -- |
| 561.24 | 1.11 | 8.01 | 0.476 | 4.66 | -- | -1.02 | -- | 0.171 | 8.08 | -- | -- | -- | -- |
| 564.33 | 1.11 | 8 | 0.447 | 4.66 | -- | -- | -- | 0.171 | 8.07 | -- | -- | -- | -- |
| 1441.8 | 1.77 | 7.81 | 0.233 | -- | 3.35 | -- | -- | 1.42 | -- | 21.1 | 23904 | -- | -- |
| 339.58 | 0.858 | 7.81 | -- | 4.58 | 2.74 | -- | -- | 1.18 | 7.95 | 21.88 | 24238 | -- | -- |
| 1754.31 | 1.96 | 8.12 | 0.489 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 569.61 | 1.12 | 8.02 | -- | 4.66 | -- | -- | -- | 0.121 | 8.07 | -- | -- | -- | -- |
| 1426.26 | 1.76 | 7.83 | -- | -- | 3.14 | -- | -- | 1.5 | -- | 12.59 | 23843 | -- | -- |
| 1760.63 | 1.96 | 8.14 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.54 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 5 | 331.62 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 6 | 331.62 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 31 | 335.09 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 44 | 336.03 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 45 | 336.06 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 59 | 336.11 | humidity | 60 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 62 | 339.46 | humidity | 90 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 68 | 340.12 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 105 | 340.85 | humidity | 50 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 128 | 341.59 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 161 | 343.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 168 | 343.31 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 188 | 343.55 | radiation | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 194 | 343.70 | humidity | 80 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 222 | 344.11 | humidity | 70 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 224 | 344.15 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 233 | 344.36 | humidity | 90 | 43200 | < th | dose dependent | sin | 23 | NA |
| 268 | 344.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 299 | 345.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 317 | 345.48 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 377 | 346.32 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 381 | 346.36 | humidity | 50 | 43200 | > th | dose dependent | sin | 23 | NA |
| 402 | 346.64 | radiation | 40 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 419 | 346.90 | radiation | 20 | 14400 | < th | dose independent | sin | 10 | NA |
| 423 | 346.91 | radiation | 10 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 426 | 346.93 | radiation | 30 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 427 | 346.94 | radiation | 30 | 14400 | < th | dose dependent | rect. | 21 | 12 |
| 446 | 347.06 | radiation | 30 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 512 | 347.65 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 532 | 347.81 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 619 | 348.59 | humidity | 70 | 43200 | > th | dose independent | sin | 21 | NA |
| 636 | 348.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 656 | 348.95 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 691 | 349.04 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 695 | 349.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 696 | 349.08 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 706 | 349.13 | humidity | 70 | 43200 | < th | dose independent | sin | 20 | NA |
| 723 | 349.27 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 836 | 349.99 | temperature | 25 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 895 | 350.33 | temperature | 25 | 43200 | > th | dose independent | sin | 7 | NA |
| 923 | 350.42 | temperature | 25 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 956 | 350.55 | wind | 9 | 14400 | < th | dose dependent | rect. | 14 | 3 |