Os06g0493600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PHO1-like protein.
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Os06g0493600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PHO1-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.84 | 0.567 | 9.63 | -2.6 | 1.96 | -0.725 | 0.536 | 1.5 | -0.877 | 7.16 | 8.095 | 1416 | -- | -- |
| 148.99 | 0.568 | 9.61 | -2.41 | 1.94 | -0.764 | 0.46 | -- | -0.831 | 6.94 | 8.072 | 1483 | -- | -- |
| 145.96 | 0.563 | 9.63 | -2.61 | 2.04 | -0.771 | -- | 1.89 | -0.871 | 7.32 | 8.275 | 1355 | -- | -- |
| 149.49 | 0.569 | 9.62 | -2.4 | 1.92 | -0.782 | -- | -- | -0.834 | 6.9 | 7.664 | 1487 | -- | -- |
| 336.54 | 0.859 | 9.63 | -2.32 | -- | -0.526 | -- | -0.539 | -0.67 | -- | 7.129 | 1492 | -- | -- |
| 162.34 | 0.597 | 9.59 | -2.37 | 1.96 | -- | 0.512 | -- | -0.693 | 7.08 | -- | -- | -- | -- |
| 163.01 | 0.598 | 9.59 | -2.36 | 1.96 | -- | -- | -- | -0.694 | 7.05 | -- | -- | -- | -- |
| 337.31 | 0.859 | 9.63 | -2.31 | -- | -0.532 | -- | -- | -0.675 | -- | 5.953 | 1510 | -- | -- |
| 292.65 | 0.797 | 9.6 | -- | 1.92 | -1.02 | -- | -- | -0.651 | 6.94 | 10 | 2961 | -- | -- |
| 366.15 | 0.894 | 9.63 | -2.32 | -- | -- | -- | -- | -0.659 | -- | -- | -- | -- | -- |
| 310.26 | 0.824 | 9.53 | -- | 1.94 | -- | -- | -- | -0.431 | 7.13 | -- | -- | -- | -- |
| 478.42 | 1.02 | 9.58 | -- | -- | -0.546 | -- | -- | -0.419 | -- | 5.953 | 1510 | -- | -- |
| 508.73 | 1.05 | 9.57 | -- | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 143.77 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 5 | 144.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 6 | 144.68 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 9 | 144.77 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 10 | 144.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 22 | 144.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 38 | 145.18 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 40 | 145.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 41 | 145.25 | radiation | 10 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 44 | 145.32 | radiation | 40 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 57 | 145.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 61 | 145.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 20 |
| 77 | 145.66 | radiation | 40 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 89 | 145.89 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 14 |
| 101 | 146.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 152 | 146.22 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 158 | 146.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 232 | 146.43 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 234 | 146.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 235 | 146.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 259 | 146.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 269 | 146.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 275 | 146.47 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 337 | 146.61 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 342 | 146.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 348 | 146.65 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 351 | 146.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 353 | 146.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 354 | 146.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 362 | 146.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 365 | 146.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 376 | 146.72 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 395 | 146.76 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 403 | 146.78 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 409 | 146.79 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 474 | 146.95 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 504 | 147.00 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 510 | 147.02 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 523 | 147.04 | radiation | 10 | 1440 | < th | dose independent | sin | 15 | NA |
| 559 | 147.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 605 | 147.15 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 613 | 147.17 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 615 | 147.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 646 | 147.23 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 652 | 147.24 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 671 | 147.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 688 | 147.34 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 753 | 147.39 | radiation | 20 | 1440 | < th | dose independent | sin | 21 | NA |
| 814 | 147.43 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 850 | 147.50 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 881 | 147.53 | atmosphere | 995 | 4320 | > th | dose independent | sin | 8 | NA |
| 970 | 147.70 | radiation | 30 | 14400 | > th | dose dependent | rect. | 10 | 1 |