BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0590900 Os12g0590900|J100033M15
(908 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0590900 Conserved hypothetical protein 1627 0.0
Os03g0765800 Conserved hypothetical protein 966 0.0
Os08g0545000 Conserved hypothetical protein 197 3e-50
>Os12g0590900 Conserved hypothetical protein
Length = 908
Score = 1627 bits (4214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/908 (88%), Positives = 807/908 (88%)
Query: 1 MHLSLWKPLSHCAAVLLAKXXXXXXXXXXXXXXXXDDPASFLRQLRDALDAASEDGSLCP 60
MHLSLWKPLSHCAAVLLAK DDPASFLRQLRDALDAASEDGSLCP
Sbjct: 1 MHLSLWKPLSHCAAVLLAKNHRRRGGGGGSNGHRGDDPASFLRQLRDALDAASEDGSLCP 60
Query: 61 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRATALAAAGGPFRSPSDIPLLPAAIAG 120
PP FLRATALAAAGGPFRSPSDIPLLPAAIAG
Sbjct: 61 PPDAAGAGADADADAAVSRSRSLARLRAQRDFLRATALAAAGGPFRSPSDIPLLPAAIAG 120
Query: 121 FLAMYPDYATTSDVDRLRVEHYSHLDXXXXXXXXXXRVCLDYCXXXXXXXXXXXXXXXXX 180
FLAMYPDYATTSDVDRLRVEHYSHLD RVCLDYC
Sbjct: 121 FLAMYPDYATTSDVDRLRVEHYSHLDAAAPGGGAGGRVCLDYCGFGLFDSGWDSSSSSFT 180
Query: 181 XXELNANLSNHALYGGAEAGTVENDIKERILEYLNVPASEYALVFTVSRGSAFRLLAECY 240
ELNANLSNHALYGGAEAGTVENDIKERILEYLNVPASEYALVFTVSRGSAFRLLAECY
Sbjct: 181 LSELNANLSNHALYGGAEAGTVENDIKERILEYLNVPASEYALVFTVSRGSAFRLLAECY 240
Query: 241 PFETNRRLLTMFDHESQSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTELRKEIVGKRRG 300
PFETNRRLLTMFDHESQSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTELRKEIVGKRRG
Sbjct: 241 PFETNRRLLTMFDHESQSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTELRKEIVGKRRG 300
Query: 301 RRRDSAVGLFVFPAQSRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKDMDSLGLSLFRP 360
RRRDSAVGLFVFPAQSRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKDMDSLGLSLFRP
Sbjct: 301 RRRDSAVGLFVFPAQSRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKDMDSLGLSLFRP 360
Query: 361 DFIITSFYRVFGADPTGFGCLLIKKSVIGSLQGRNGCNASGMVRIVPVFPQYLSDSVDGF 420
DFIITSFYRVFGADPTGFGCLLIKKSVIGSLQGRNGCNASGMVRIVPVFPQYLSDSVDGF
Sbjct: 361 DFIITSFYRVFGADPTGFGCLLIKKSVIGSLQGRNGCNASGMVRIVPVFPQYLSDSVDGF 420
Query: 421 DAMDGLEDDSGVHKDEKPASDARNGSQLPAFSGVYTSAQVREAFEXXXXXXXXXXXXXAS 480
DAMDGLEDDSGVHKDEKPASDARNGSQLPAFSGVYTSAQVREAFE AS
Sbjct: 421 DAMDGLEDDSGVHKDEKPASDARNGSQLPAFSGVYTSAQVREAFESDPGRDSSSDRDGAS 480
Query: 481 TIFEETESISVGEVMRSPAFSEDCSSENSFWVDVGQSPLGSEKGGHFKKGKLGSPLPSSW 540
TIFEETESISVGEVMRSPAFSEDCSSENSFWVDVGQSPLGSEKGGHFKKGKLGSPLPSSW
Sbjct: 481 TIFEETESISVGEVMRSPAFSEDCSSENSFWVDVGQSPLGSEKGGHFKKGKLGSPLPSSW 540
Query: 541 FAGRKSNKRMSPNLTSRISRSPLYDGQVISFDAAVLSVSHDADCLKEDPEEEIYENGRRN 600
FAGRKSNKRMSPNLTSRISRSPLYDGQVISFDAAVLSVSHDADCLKEDPEEEIYENGRRN
Sbjct: 541 FAGRKSNKRMSPNLTSRISRSPLYDGQVISFDAAVLSVSHDADCLKEDPEEEIYENGRRN 600
Query: 601 HFRQXXXXXXXXXXXXXXCQHAMNGGGDHKESAIRRETEGEFRLLGGRDGNSRFAGGRLF 660
HFRQ CQHAMNGGGDHKESAIRRETEGEFRLLGGRDGNSRFAGGRLF
Sbjct: 601 HFRQVSEIQEEPEVEEVVCQHAMNGGGDHKESAIRRETEGEFRLLGGRDGNSRFAGGRLF 660
Query: 661 GVEEIDAGLSMGRRVSFSTEANIIADRLHRASDAAEASGYAFRDDDGCVSDGYDNAQDWG 720
GVEEIDAGLSMGRRVSFSTEANIIADRLHRASDAAEASGYAFRDDDGCVSDGYDNAQDWG
Sbjct: 661 GVEEIDAGLSMGRRVSFSTEANIIADRLHRASDAAEASGYAFRDDDGCVSDGYDNAQDWG 720
Query: 721 RREPEIICRHIDHVDMMGLNRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPK 780
RREPEIICRHIDHVDMMGLNRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPK
Sbjct: 721 RREPEIICRHIDHVDMMGLNRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPK 780
Query: 781 IKYERGAAVAFNVKQSDGTFVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDI 840
IKYERGAAVAFNVKQSDGTFVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDI
Sbjct: 781 IKYERGAAVAFNVKQSDGTFVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDI 840
Query: 841 PEASFYKNGRKDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESERLTIA 900
PEASFYKNGRKDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESERLTIA
Sbjct: 841 PEASFYKNGRKDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESERLTIA 900
Query: 901 ADHSEGQT 908
ADHSEGQT
Sbjct: 901 ADHSEGQT 908
>Os03g0765800 Conserved hypothetical protein
Length = 935
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/955 (56%), Positives = 633/955 (66%), Gaps = 71/955 (7%)
Query: 1 MHLSLWKPLSHCAAVLLAKXXXXXXXXXXXXXXXXDDPASFLRQLRDALDAASEDGSLCP 60
MHLSLWKPL++CA +L + S +LR+AL+ ASEDGSL
Sbjct: 1 MHLSLWKPLANCATLLKNRPPRPPAAGGAAGGSGRRLQES---KLREALEEASEDGSLAK 57
Query: 61 P-------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRATALAAAGGPFRSPSDIPL 113
FLRATA+AA F SP +P
Sbjct: 58 SRDAALLDDGGGGGDGGGEEGSGVGRSRSLARLNAQREFLRATAVAAERA-FLSPDALPA 116
Query: 114 LPAAIAGFLAMYPDYATTSDVDRLRVEHYSHLDXXXXXXXXXXRVCLDYCX----XXXXX 169
L A+A FL+MYP Y++ +DVDRLR + Y HLD +VCLDYC
Sbjct: 117 LEEALATFLSMYPKYSSAADVDRLRADEYPHLD----------KVCLDYCGFGLFSYLQS 166
Query: 170 XXXXXXXXXXXXXELNANLSNHALYGGAEAGTVENDIKERILEYLNVPASEYALVFTVSR 229
E+ ANLSNHALYG AE GT E+D+K RI+EYLN+P SEY LVFTVSR
Sbjct: 167 CNPSDSTASFTLSEITANLSNHALYGAAEKGTCEHDVKARIMEYLNIPESEYCLVFTVSR 226
Query: 230 GSAFRLLAECYPFETNRRLLTMFDHESQSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTE 289
GSAFRLLAECYPF TN+RLLTMFDHESQSV+WMAQSAR KGAK TAWF+WPTLK+CSTE
Sbjct: 227 GSAFRLLAECYPFGTNKRLLTMFDHESQSVNWMAQSARDKGAKAYTAWFKWPTLKICSTE 286
Query: 290 LRKEIVGKRRGRRRDSAVGLFVFPAQSRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKD 349
LRK I K+R R++DSA GLFVFP QSRVTGAKYSYQWMALAQQN WHV+LDAGALGPKD
Sbjct: 287 LRKLISTKKRRRKKDSATGLFVFPVQSRVTGAKYSYQWMALAQQNHWHVLLDAGALGPKD 346
Query: 350 MDSLGLSLFRPDFIITSFYRVFGADPTGFGCLLIKKSVIGSLQGRNGCNASGMVRIVPVF 409
MDSLGLSLFRPDFIITSFYRVFGADPTGFGCLLIKKSV+ LQ NG +GMVRI+PVF
Sbjct: 347 MDSLGLSLFRPDFIITSFYRVFGADPTGFGCLLIKKSVMSCLQSPNGGTGTGMVRIMPVF 406
Query: 410 PQYLSDSVDGFD-AMDGLEDDSGVHKDEKPASDARNGSQLPAFSGVYTSAQVREAFEXXX 468
PQYLSDSVDGFD +DGLEDD+ + +E AS++ + + LPAFSG Y+SAQVRE E
Sbjct: 407 PQYLSDSVDGFDGVLDGLEDDTIIPIEEGSASNSLHATHLPAFSGAYSSAQVREVIE-DE 465
Query: 469 XXXXXXXXXXASTIFEETESISVGEVMRSPAFSEDCSSENSFWVDVGQSPLGSEKGGHFK 528
ASTI+EE ES+SVGEVM+SP FSED SSENSFWVD+GQSPLGS+
Sbjct: 466 MDQDSSDRDGASTIYEENESVSVGEVMKSPVFSEDESSENSFWVDLGQSPLGSDHSEQSS 525
Query: 529 KGKLGSPLPSSWFAGRKSNKRMSPNLTSRISRSPLYDGQVISFDAAVLSVSHDADCLKED 588
KGKLGSPLP+SWF+GRK+ K+ SP + S++ RSP+ D V+SFDAAV SVS + + K+
Sbjct: 526 KGKLGSPLPASWFSGRKNVKKTSPKVLSKLRRSPIPDNHVVSFDAAVRSVSQELEHGKDF 585
Query: 589 PEEEIYENGRRN-------HFRQXXXXXXXXXXXXXXCQH--------AMNGG------- 626
EE+ +NG +N + C + ++ GG
Sbjct: 586 TEEDCSQNGIKNVVPIKVSEIEEDQDGKQNKRFVKFSCANGPAEGSSTSVFGGCTARGNG 645
Query: 627 ------GDHKESAIRRETEGEFRLLGGRDG-NSRFAGGRLFGVEEIDAGLSMGRRVSFST 679
+ K+SAIRRE EG+FRLLG R+ NSRF GGR GVEE + SMGR+VSFS
Sbjct: 646 STSEICSEAKDSAIRRENEGDFRLLGRREAHNSRFNGGRFVGVEEAERVSSMGRKVSFSM 705
Query: 680 EANIIADRLHRASDAAEASGYAFRDDDGCVSDGYDNAQDWGRREPEIICRHIDHVDMMGL 739
E + RL R S+ AE SGYA D+D + GRREPEIIC+H+DHV+ +GL
Sbjct: 706 EDS----RLCRNSETAETSGYAMGDEDDDEEYSDYDDIQDGRREPEIICKHLDHVNQLGL 761
Query: 740 NRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPKIKYERGAAVAFNVKQ-SDG 798
++TTLRLRYLINWLVTSLLQLRLP S G+G PLV+IYGPKIKYERGAAVAFN+K S G
Sbjct: 762 SKTTLRLRYLINWLVTSLLQLRLPDSGDGEGVPLVYIYGPKIKYERGAAVAFNIKDCSTG 821
Query: 799 T-FVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDIPEASFY----KNGR--- 850
T +N E VQK+AEK G+SLGIGFLSHI++ N KQ G D+ +S NGR
Sbjct: 822 TSLINPETVQKLAEKEGLSLGIGFLSHIRIMDNQKQ--GVVDVGLSSSLCRPTSNGRREK 879
Query: 851 KDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESERLTIAADHSE 905
K SK I +EVVTASLGFLTNFEDVY +WAFVAKFLD SFLE +RL+ + SE
Sbjct: 880 KSSKNDIIGIEVVTASLGFLTNFEDVYRLWAFVAKFLDSSFLEQQRLSSIPEDSE 934
>Os08g0545000 Conserved hypothetical protein
Length = 659
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 177/332 (53%), Gaps = 35/332 (10%)
Query: 102 GGPFRSPSDIPLLPAAIAGFLAMYPDYATTSDVDRLRVEHYSHLDXXXXXXXXXXRVCLD 161
G F + +P + A A F+A +P YA + D +R Y HLD VCLD
Sbjct: 82 GAQFTNHESLPAMEEAYAEFVAAFPQYAGLAQADAIRDGEYQHLDR---------HVCLD 132
Query: 162 YCXXXXXXXXXXXXXXXXXXXELNANLSNHA--------------LYGGAEAG------- 200
Y A+ S A L + G
Sbjct: 133 YTGINLFSHAQMNSSVPSTSATPPASSSGAAWQPPFFDIAYKSTSLRSQVQCGDDVAAAS 192
Query: 201 ---TVENDIKERILEYLNVPASEYALVFTVSRGSAFRLLAECYPFETN-RRLLTMFDHES 256
+ + R++ LN+P EYA+V T +R +AFRLLAE Y F+ + +RLLT++D+ES
Sbjct: 193 AAGGIGGAVTRRVMASLNIPDDEYAMVCTANRTTAFRLLAESYSFQQHGKRLLTVYDYES 252
Query: 257 QSVSWMAQSARAKGAKTRTAWFRWPTLKLCSTELRKEIVGKRRGRRRDSAVGL-FVFPAQ 315
++ MA+SAR +GA+ +A F WP +++ + +LRK+++ RR FVFP
Sbjct: 253 EAAGAMAESARRRGAEVMSATFAWPGMRVHAADLRKKLLRGRRRGGGGGHRRGLFVFPLV 312
Query: 316 SRVTGAKYSYQWMALAQQNGWHVMLDAGALGPKDMDSLGLSLFRPDFIITSFYRVFGADP 375
SR+TGA+Y Y WM+ A + GWHV LDA ALG KD+D+LGLSL RPDFI+ +F++VFG +P
Sbjct: 313 SRMTGARYPYLWMSAAHEQGWHVALDACALGTKDLDTLGLSLLRPDFIVCNFFKVFGENP 372
Query: 376 TGFGCLLIKKSVIGSLQGRNGCNASGMVRIVP 407
+GF L +KKS + +L+ + G+V IVP
Sbjct: 373 SGFAGLFVKKSSLAALERSVIARSIGIVSIVP 404
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 13/176 (7%)
Query: 725 EIICRHIDHVDMMGLNRTTLRLRYLINWLVTSLLQLRLPGSKGGDGDPLVHIYGPKIKYE 784
E+ CR +DH D +GL RLR + NWLV ++ +LR P S+ G LV +YGP++K+E
Sbjct: 480 EVECRGLDHADALGLIAIGNRLRCISNWLVVAMQKLRHPQSE--QGKALVRVYGPRVKFE 537
Query: 785 RGAAVAFNVKQSDGTFVNAEVVQKIAEKNGISLGIGFLSHIKVDLNHKQLNGAFDIPEAS 844
RG ++AFNV G V +VQK+A+++ ISL GFL HI + +D A+
Sbjct: 538 RGPSLAFNVFDWKGEKVAPPLVQKLADRHNISLTCGFLRHI-------CFSDKYDADRAA 590
Query: 845 FYKN----GRKDSKKVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESER 896
++ G++ + + VV ASLGFLTNF+D Y +WAFVAKFLD F+E ER
Sbjct: 591 VLEHIDGGGKRKDAAGEMGIYVVNASLGFLTNFDDAYRLWAFVAKFLDADFVEKER 646
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,364,797
Number of extensions: 1218545
Number of successful extensions: 2550
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2534
Number of HSP's successfully gapped: 6
Length of query: 908
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 798
Effective length of database: 11,292,261
Effective search space: 9011224278
Effective search space used: 9011224278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)