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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0590900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.65 (0.0395) R2 : 0.712
β1 : 1.17 (0.145) R2dD : 0.0432 R2D : 0.0184
β2 : 1.3 (0.127) R2dC : 0.118 R2C : 0.349
β3 : -2.24 (0.143) R2dE : 0.275 R2E : 0.503
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.708 (0.0843) R2dN8 : 0.0597 R2N8 : 0.0327
σ : 0.738
deviance : 251.18
__
_____
C
peak time of C : 1.93
E
wheather : radiation
threshold : 1.866
memory length : 253
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.89
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.82 0.74 5.65 1.17 1.35 -2.21 -1.16 -1.47 0.708 1.87 1.88 254 2.09 --
250.91 0.738 5.65 1.15 1.32 -2.25 -0.282 -- 0.709 1.92 1.861 253 1.93 --
250.45 0.737 5.65 1.18 1.32 -2.23 -- -0.511 0.707 1.9 1.87 253 1.99 --
251.18 0.738 5.65 1.17 1.3 -2.24 -- -- 0.708 1.93 1.866 253 1.89 --
274.15 0.771 5.66 1.29 -- -2.77 -- -0.0438 0.67 -- 1.18 364 1.46 --
309.95 0.825 5.69 1.16 2.8 -- 0.184 -- 0.7 0.246 -- -- -- --
310.1 0.825 5.69 1.15 2.79 -- -- -- 0.699 0.249 -- -- -- --
272.19 0.768 5.65 1.23 -- -2.82 -- -- 0.661 -- 1.154 353 0.503 --
287.87 0.79 5.65 -- 1.44 -2.11 -- -- 0.625 1.71 1.88 256 2.17 --
801.36 1.32 5.63 1.25 -- -- -- -- 0.742 -- -- -- -- --
345.16 0.869 5.72 -- 2.81 -- -- -- 0.571 0.271 -- -- -- --
311.79 0.822 5.67 -- -- -2.85 -- -- 0.577 -- 1.252 341 0.327 --
842.27 1.35 5.67 -- -- -- -- -- 0.604 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.83 radiation 1.0 90 > th dose independent rect. 6 7
2 249.50 temperature 30.0 270 < th dose dependent rect. 6 3
3 249.56 humidity 50.0 90 > th dose independent rect. 6 7
6 250.89 temperature 30.0 270 < th dose dependent rect. 7 1
7 251.16 precipitation 0.1 90 < th dose independent rect. 6 7
8 251.16 precipitation 0.1 90 < th dose dependent rect. 6 7
9 251.37 wind 9.0 90 < th dose independent rect. 13 17
10 251.47 temperature 10.0 90 > th dose independent rect. 6 7
11 251.47 atmosphere 995.0 90 > th dose independent rect. 6 7
12 251.47 atmosphere 1015.0 90 < th dose independent rect. 6 7
13 251.47 temperature 10.0 90 > th dose independent rect. 13 17
16 252.72 temperature 30.0 90 < th dose dependent rect. 6 6
17 252.98 humidity 50.0 270 > th dose dependent rect. 21 9
18 253.00 humidity 50.0 270 > th dose independent rect. 4 8
19 253.11 atmosphere 995.0 90 > th dose independent rect. 13 17
20 253.16 wind 9.0 270 < th dose independent rect. 1 15
22 253.45 wind 9.0 90 < th dose independent rect. 6 7
23 253.55 radiation 1.0 270 > th dose independent rect. 17 19
26 253.81 precipitation 0.1 270 < th dose independent rect. 16 9
27 253.81 precipitation 0.1 270 < th dose dependent rect. 16 9
30 254.09 humidity 90.0 10 < th dose independent rect. 7 5
38 254.81 radiation 40.0 90 < th dose independent rect. 13 17
39 254.83 precipitation 0.1 270 < th dose independent rect. 4 8
40 254.83 precipitation 0.1 270 < th dose dependent rect. 4 8
55 255.04 humidity 90.0 90 < th dose independent rect. 19 17
57 255.11 radiation 1.0 270 > th dose independent sin 8 NA
59 255.24 humidity 90.0 10 < th dose independent rect. 7 7
60 255.25 wind 1.0 270 > th dose independent rect. 16 9
69 255.55 atmosphere 995.0 270 > th dose independent rect. 1 15
70 255.68 temperature 15.0 270 > th dose independent rect. 1 15
73 255.95 precipitation 0.1 270 < th dose independent rect. 18 16
74 255.95 precipitation 0.1 270 < th dose dependent rect. 18 16
76 256.00 radiation 30.0 270 < th dose independent rect. 16 9
78 256.05 temperature 10.0 270 > th dose independent rect. 4 8
79 256.05 atmosphere 995.0 270 > th dose independent rect. 4 8
80 256.05 atmosphere 1015.0 270 < th dose independent rect. 4 8
82 256.09 temperature 10.0 270 > th dose independent rect. 16 9
85 256.09 atmosphere 1015.0 270 < th dose independent rect. 1 15
87 256.14 wind 1.0 90 > th dose independent rect. 6 7
89 256.29 wind 9.0 270 < th dose independent rect. 16 9
94 256.55 temperature 10.0 270 > th dose dependent rect. 17 8
97 256.69 precipitation 0.1 270 < th dose independent rect. 17 18
98 256.69 precipitation 0.1 270 < th dose dependent rect. 17 18
119 257.02 radiation 1.0 270 < th dose independent sin 8 NA
134 257.56 humidity 90.0 90 < th dose independent rect. 6 7
139 257.66 wind 9.0 270 < th dose independent rect. 4 8
164 258.39 precipitation 0.1 270 < th dose independent rect. 6 16
165 258.39 precipitation 0.1 270 < th dose dependent rect. 6 16
176 258.80 wind 1.0 10 > th dose independent rect. 7 7
184 259.00 precipitation 0.1 90 < th dose independent rect. 13 17
185 259.00 precipitation 0.1 90 < th dose dependent rect. 13 17
197 259.33 precipitation 0.1 10 < th dose independent rect. 7 5
198 259.33 precipitation 0.1 10 < th dose dependent rect. 7 5
209 259.44 wind 1.0 10 > th dose independent rect. 7 5
215 259.59 radiation 10.0 270 < th dose dependent rect. 22 9
217 259.61 temperature 15.0 10 > th dose independent rect. 12 19
219 259.62 radiation 40.0 270 < th dose dependent rect. 16 9
227 259.75 wind 9.0 10 < th dose independent rect. 12 19
229 259.77 temperature 10.0 10 > th dose independent rect. 7 5
231 259.77 atmosphere 995.0 10 > th dose independent rect. 7 5
232 259.77 atmosphere 1015.0 10 < th dose independent rect. 7 5
236 259.80 radiation 1.0 270 < th dose independent rect. 23 9
243 259.92 humidity 70.0 10 > th dose dependent sin 6 NA
244 259.92 radiation 10.0 30 < th dose dependent sin 3 NA
266 260.30 wind 9.0 270 < th dose independent rect. 10 8
268 260.32 wind 7.0 270 < th dose independent rect. 11 6
269 260.32 temperature 10.0 1440 > th dose independent rect. 7 7
272 260.32 atmosphere 995.0 1440 > th dose independent rect. 7 7
274 260.32 temperature 10.0 1440 > th dose independent rect. 14 17
279 260.37 radiation 10.0 10 > th dose independent sin 5 NA
280 260.37 temperature 15.0 270 > th dose independent rect. 10 8
289 260.41 temperature 10.0 1440 > th dose independent rect. 8 5
292 260.41 atmosphere 995.0 1440 > th dose independent rect. 8 5
293 260.41 temperature 10.0 1440 > th dose independent rect. 13 19
302 260.46 humidity 70.0 90 > th dose dependent rect. 23 10
311 260.50 humidity 50.0 270 > th dose independent rect. 17 18
312 260.50 radiation 1.0 270 < th dose dependent sin 7 NA
313 260.51 radiation 1.0 90 > th dose independent sin 3 NA
332 260.59 precipitation 0.1 270 < th dose independent rect. 1 15
333 260.59 precipitation 0.1 270 < th dose dependent rect. 1 15
349 260.75 radiation 20.0 30 < th dose dependent sin 5 NA
351 260.76 radiation 1.0 270 < th dose independent rect. 22 20
381 261.00 temperature 10.0 270 > th dose independent rect. 22 8
382 261.00 temperature 30.0 270 < th dose independent rect. 22 8
383 261.00 humidity 50.0 270 > th dose independent rect. 22 8
386 261.00 atmosphere 995.0 270 > th dose independent rect. 22 8
390 261.00 temperature 10.0 270 > th dose independent rect. 6 16
392 261.02 wind 9.0 270 < th dose independent rect. 22 8
400 261.12 wind 9.0 10 < th dose independent rect. 7 5
401 261.12 radiation 1.0 270 < th dose independent rect. 23 18
408 261.24 atmosphere 995.0 10 > th dose independent rect. 12 19
420 261.28 temperature 30.0 90 < th dose independent rect. 6 6
436 261.37 humidity 50.0 270 > th dose independent rect. 16 9
457 261.51 humidity 50.0 270 > th dose independent rect. 18 16
475 261.59 precipitation 0.1 270 < th dose independent rect. 16 20
477 261.59 precipitation 0.1 270 < th dose dependent rect. 16 20
489 261.70 temperature 15.0 270 > th dose independent rect. 11 6
504 261.73 atmosphere 995.0 270 > th dose independent rect. 11 6
549 261.97 atmosphere 1015.0 270 < th dose independent rect. 10 8
550 261.97 temperature 10.0 270 > th dose independent rect. 18 16
552 261.99 atmosphere 1015.0 90 < th dose independent rect. 13 17
553 262.04 wind 9.0 270 < th dose independent rect. 18 16
554 262.04 temperature 25.0 90 < th dose independent rect. 13 17
559 262.11 radiation 20.0 43200 < th dose dependent rect. 19 9
565 262.18 atmosphere 1015.0 270 < th dose independent rect. 6 16
574 262.25 atmosphere 1015.0 270 < th dose independent rect. 11 6
575 262.25 temperature 10.0 270 > th dose independent rect. 17 18
592 262.37 atmosphere 995.0 270 > th dose independent rect. 16 9
607 262.54 wind 9.0 270 < th dose independent rect. 17 18
608 262.59 atmosphere 995.0 90 > th dose dependent rect. 12 6
615 262.67 radiation 10.0 30 < th dose dependent rect. 3 15
626 262.72 atmosphere 995.0 270 > th dose independent rect. 10 8
627 262.73 radiation 1.0 270 < th dose dependent rect. 23 19
628 262.74 radiation 1.0 90 < th dose independent sin 3 NA
664 262.94 atmosphere 995.0 270 > th dose independent rect. 18 16
679 262.96 precipitation 0.1 270 < th dose independent rect. 15 22
680 262.96 precipitation 0.1 270 < th dose dependent rect. 15 22
695 263.15 atmosphere 995.0 270 > th dose dependent rect. 12 4
742 263.29 precipitation 0.1 270 < th dose independent rect. 11 6
743 263.29 precipitation 0.1 270 < th dose dependent rect. 11 6
745 263.30 precipitation 0.1 270 < th dose independent rect. 10 8
747 263.30 precipitation 0.1 270 < th dose dependent rect. 10 8
812 263.60 temperature 10.0 270 > th dose dependent rect. 1 15
814 263.62 atmosphere 1015.0 270 < th dose independent rect. 23 7
871 264.09 humidity 70.0 90 > th dose dependent rect. 1 8
880 264.12 temperature 25.0 270 < th dose independent rect. 6 3
890 264.24 temperature 30.0 270 < th dose independent rect. 18 16
925 264.38 wind 9.0 270 < th dose independent rect. 6 16
968 264.72 precipitation 0.1 270 < th dose independent rect. 23 7
970 264.72 precipitation 0.1 270 < th dose dependent rect. 23 7
972 264.75 wind 1.0 270 > th dose independent rect. 11 6