Os08g0545000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0545000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.96 | 0.443 | 12.7 | 0.221 | 2.23 | 0.724 | 0.337 | -0.244 | 0.0925 | 22.6 | 20.28 | 399 | -- | -- |
| 89.14 | 0.44 | 12.7 | 0.261 | 2.23 | 0.754 | 0.311 | -- | 0.0997 | 22.6 | 20.29 | 399 | -- | -- |
| 89.42 | 0.44 | 12.7 | 0.216 | 2.23 | 0.735 | -- | -0.196 | 0.091 | 22.6 | 20.2 | 398 | -- | -- |
| 89.28 | 0.44 | 12.7 | 0.217 | 2.22 | 0.853 | -- | -- | 0.103 | 22.6 | 19.7 | 382 | -- | -- |
| 313.03 | 0.824 | 12.8 | 0.0575 | -- | 1.44 | -- | 0.154 | -0.272 | -- | 25.05 | 775 | -- | -- |
| 105.92 | 0.482 | 12.7 | 0.512 | 2.26 | -- | 0.387 | -- | 0.249 | 22.4 | -- | -- | -- | -- |
| 106.53 | 0.483 | 12.7 | 0.496 | 2.26 | -- | -- | -- | 0.248 | 22.4 | -- | -- | -- | -- |
| 311.01 | 0.821 | 12.8 | 0.0564 | -- | 1.58 | -- | -- | -0.315 | -- | 25.14 | 800 | -- | -- |
| 90.11 | 0.442 | 12.7 | -- | 2.23 | 0.944 | -- | -- | 0.074 | 22.6 | 19.5 | 378 | -- | -- |
| 419.34 | 0.957 | 12.6 | 0.534 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 113.02 | 0.497 | 12.7 | -- | 2.26 | -- | -- | -- | 0.193 | 22.4 | -- | -- | -- | -- |
| 311.09 | 0.821 | 12.8 | -- | -- | 1.59 | -- | -- | -0.324 | -- | 25.2 | 800 | -- | -- |
| 426.86 | 0.964 | 12.7 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.03 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 3 | 81.70 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 10 |
| 19 | 84.74 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 22 |
| 26 | 85.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 37 | 86.03 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 17 |
| 46 | 86.32 | radiation | 10 | 10 | < th | dose dependent | sin | 22 | NA |
| 63 | 86.92 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 69 | 87.23 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 102 | 88.57 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 105 | 88.61 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 13 |
| 137 | 89.03 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 17 |
| 196 | 89.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 221 | 89.60 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 243 | 89.70 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 271 | 89.85 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 6 |
| 276 | 89.87 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 11 |
| 285 | 89.90 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 22 |
| 287 | 89.91 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 3 |
| 302 | 89.98 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 308 | 90.01 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 9 |
| 342 | 90.13 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 346 | 90.16 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 352 | 90.19 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 9 |
| 376 | 90.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 380 | 90.29 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 393 | 90.34 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 8 |
| 396 | 90.35 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 399 | 90.36 | radiation | 10 | 90 | < th | dose independent | rect. | 8 | 12 |
| 486 | 90.61 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 495 | 90.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 502 | 90.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 9 |
| 520 | 90.73 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 525 | 90.76 | radiation | 10 | 30 | < th | dose independent | sin | 22 | NA |
| 533 | 90.79 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 652 | 91.20 | radiation | 10 | 90 | > th | dose independent | sin | 22 | NA |
| 667 | 91.27 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 835 | 91.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 850 | 91.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 943 | 91.96 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 19 |
| 998 | 92.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |