BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0581900 Os12g0581900|AK066117
(195 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0581900 Zinc finger, C2H2-type domain containing protein 306 7e-84
AK061547 305 2e-83
Os03g0607700 Zinc finger, C2H2-type domain containing protein 126 1e-29
Os07g0593000 Similar to Zinc-finger protein KNUCKLES 118 2e-27
Os03g0239300 Zinc finger, C2H2-type domain containing protein 71 6e-13
Os08g0278500 64 5e-11
Os09g0558800 Zinc finger, C2H2-type domain containing protein 64 7e-11
>Os12g0581900 Zinc finger, C2H2-type domain containing protein
Length = 195
Score = 306 bits (783), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 153/195 (78%), Positives = 153/195 (78%)
Query: 1 MEQADESSVNKXXXXXXXXXXXXXXXGATWLSLTLATQGSPXXXXXXXXXXXXXXXXXXX 60
MEQADESSVNK GATWLSLTLATQGSP
Sbjct: 1 MEQADESSVNKESSEQQQLTSEQDDDGATWLSLTLATQGSPEEATAEAEETEAANCSESE 60
Query: 61 XXXXXXXXHKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA 120
HKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA
Sbjct: 61 APKPSSAPHKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA 120
Query: 121 AFVHSLRVNQSSVIQKASQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS 180
AFVHSLRVNQSSVIQKASQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS
Sbjct: 121 AFVHSLRVNQSSVIQKASQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS 180
Query: 181 DQPSEQSKIDLNLRL 195
DQPSEQSKIDLNLRL
Sbjct: 181 DQPSEQSKIDLNLRL 195
>AK061547
Length = 195
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/195 (77%), Positives = 152/195 (77%)
Query: 1 MEQADESSVNKXXXXXXXXXXXXXXXGATWLSLTLATQGSPXXXXXXXXXXXXXXXXXXX 60
MEQADESSVNK GATWLSLTLATQGSP
Sbjct: 1 MEQADESSVNKESSEQQQLTSEQDDDGATWLSLTLATQGSPEEATAEAEETEAANCSESE 60
Query: 61 XXXXXXXXHKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA 120
HKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA
Sbjct: 61 APKPSSAPHKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHA 120
Query: 121 AFVHSLRVNQSSVIQKASQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS 180
AFVHSLRVNQSSVIQKA QQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS
Sbjct: 121 AFVHSLRVNQSSVIQKAGQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFRLRSQPS 180
Query: 181 DQPSEQSKIDLNLRL 195
DQPSEQSKIDLNLRL
Sbjct: 181 DQPSEQSKIDLNLRL 195
>Os03g0607700 Zinc finger, C2H2-type domain containing protein
Length = 245
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 100/168 (59%), Gaps = 41/168 (24%)
Query: 69 HKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS-------YHAQRMMM---GLPLEA 118
+KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKR+ H RMMM GLPLEA
Sbjct: 78 NKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRTPSSSPYHLHHHRMMMAGAGLPLEA 137
Query: 119 HAAFVH-SLRVN-QSSVIQKASQQ-------AQIRTAPRFHEGSIS--------WPPI-- 159
HAAF+ +LRVN S I K QQ Q TAPRFH+G+ W P+
Sbjct: 138 HAAFMRAALRVNPAGSAIHKQQQQHQPPPPITQDATAPRFHDGAAVAAAAAVTPWAPVAP 197
Query: 160 -AYEEV---PNSTWPGSFRLRS--------QPSDQPSEQSKIDLNLRL 195
AY+EV S+WPGSFR R+ + + KIDL+LRL
Sbjct: 198 LAYDEVLSSSASSWPGSFRFRTQPEPPPSSEQEPPSEQSKKIDLSLRL 245
>Os07g0593000 Similar to Zinc-finger protein KNUCKLES
Length = 188
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 86/134 (64%), Gaps = 8/134 (5%)
Query: 69 HKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS--YHAQRMMMGLPLEAHAAFVHSL 126
H+ FSCN+CMRKFFSSQALGGHQNAHKRER A ++S + Q +M+GL A ++F+H +
Sbjct: 56 HRTFSCNYCMRKFFSSQALGGHQNAHKRERCAPRKSHGFQQQHLMVGLSPTAPSSFLHHM 115
Query: 127 RVNQSSVIQKASQ---QAQIRTAPRFHEG--SISWPPIAYEEVPNSTWPGSFRLRSQPSD 181
RVN + I K ++ A +FH G S SW P A E S WPGSF+ SQ
Sbjct: 116 RVNPHATILKVNRGYSSADGVVVAKFHGGQMSSSWVPFAVEHGRGSVWPGSFKASSQEQK 175
Query: 182 QPSEQSKIDLNLRL 195
+ +E+ +DL+LRL
Sbjct: 176 KRTEED-LDLSLRL 188
>Os03g0239300 Zinc finger, C2H2-type domain containing protein
Length = 240
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 70 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMG------LPLEAHAAFV 123
+VF+CN+C RKFFSSQALGGHQNAH+RER+ A+R+ G LPL +
Sbjct: 78 RVFTCNYCQRKFFSSQALGGHQNAHRRERTLARRAVRLDAFPYGYADVASLPLYGAGLYP 137
Query: 124 HSLRVNQSS-----VIQKASQQAQIRTAPRFHEGSISWPPIAYEEVPNSTWPGSFR 174
++ + S + + +A++R+A + A +E + WPGSFR
Sbjct: 138 IGIQAHASVHHHHPGVAAPAGRAELRSARALLGPMPFFVQAAGDEDASFGWPGSFR 193
>Os08g0278500
Length = 306
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 71 VFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS 104
+F CN+C RKF++SQALGGHQNAHKRERS AKR
Sbjct: 106 LFKCNYCQRKFYTSQALGGHQNAHKRERSLAKRG 139
>Os09g0558800 Zinc finger, C2H2-type domain containing protein
Length = 165
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 70 KVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRS 104
+ FSCN+C RKFFSSQALGGHQNAHK ER+ AKRS
Sbjct: 47 EAFSCNYCHRKFFSSQALGGHQNAHKLERTLAKRS 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.125 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,751,289
Number of extensions: 152088
Number of successful extensions: 514
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)