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Os03g0239300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.64 (0.0265) R2 : 0.713
β1 : -0.988 (0.0968) R2dD : 0.0679 R2D : 0.0709
β2 : 2.01 (0.0632) R2dC : 0.638 R2C : 0.629
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.182 (0.0564) R2dN8 : 0.00872 R2N8 : 0.0128
σ : 0.497
deviance : 112.77
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.07 0.448 9.61 -0.932 1.12 1.04 -0.109 0.796 0.25 21.4 21.83 45 -- --
92.21 0.447 9.61 -0.922 1.15 1.01 0.627 -- 0.252 21.7 22.03 45 -- --
91.09 0.445 9.61 -0.925 1.13 1.03 -- 0.74 0.249 21.5 21.94 45 -- --
93.68 0.451 9.61 -0.946 1.11 1.06 -- -- 0.252 21.4 22.08 46 -- --
111.62 0.495 9.59 -0.998 -- 1.61 -- 0.622 0.2 -- 10.22 26 -- --
109.07 0.49 9.64 -0.951 2.01 -- 0.943 -- 0.184 22.9 -- -- -- --
112.77 0.497 9.64 -0.988 2.01 -- -- -- 0.182 22.8 -- -- -- --
113.95 0.499 9.59 -1.02 -- 1.6 -- -- 0.203 -- 9.586 19 -- --
117.13 0.504 9.59 -- 1.07 1.13 -- -- 0.359 21.2 22.39 47 -- --
362.7 0.89 9.59 -0.947 -- -- -- -- 0.194 -- -- -- -- --
138.51 0.551 9.62 -- 2 -- -- -- 0.292 22.8 -- -- -- --
140.24 0.552 9.56 -- -- 1.58 -- -- 0.357 -- 8.591 9 -- --
386.34 0.917 9.57 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.08 radiation 10.0 30 < th dose dependent rect. 2 18
3 84.80 temperature 30.0 90 < th dose dependent rect. 19 7
6 85.04 temperature 10.0 270 > th dose dependent rect. 14 14
7 85.32 temperature 30.0 10 < th dose dependent rect. 20 6
24 86.21 temperature 20.0 90 > th dose independent rect. 15 14
29 86.41 radiation 1.0 30 > th dose independent sin 1 NA
30 86.41 radiation 40.0 90 < th dose dependent rect. 11 9
35 86.59 radiation 1.0 30 < th dose independent rect. 2 18
37 86.68 temperature 30.0 270 < th dose dependent rect. 17 8
47 87.01 radiation 40.0 90 < th dose independent rect. 11 9
50 87.04 radiation 10.0 30 < th dose dependent sin 1 NA
108 88.08 radiation 20.0 90 < th dose independent rect. 2 18
110 88.09 radiation 40.0 270 < th dose independent rect. 13 15
114 88.12 humidity 50.0 10 > th dose dependent rect. 2 18
134 88.43 radiation 20.0 10 < th dose independent rect. 12 8
143 88.52 radiation 1.0 30 < th dose independent sin 1 NA
172 88.80 radiation 20.0 10 < th dose dependent rect. 13 20
173 88.81 radiation 10.0 30 < th dose dependent rect. 2 14
188 88.95 humidity 70.0 10 > th dose dependent rect. 2 14
196 89.01 atmosphere 995.0 10 > th dose independent rect. 2 18
206 89.07 precipitation 0.1 270 < th dose independent rect. 5 10
207 89.07 precipitation 0.1 270 < th dose dependent rect. 5 10
252 89.40 temperature 10.0 10 > th dose independent rect. 20 6
253 89.40 temperature 30.0 10 < th dose independent rect. 20 6
254 89.40 humidity 50.0 10 > th dose independent rect. 20 6
257 89.40 atmosphere 995.0 10 > th dose independent rect. 20 6
258 89.40 radiation 1.0 10 < th dose independent rect. 20 6
263 89.40 temperature 10.0 10 > th dose independent rect. 2 18
265 89.40 atmosphere 1015.0 10 < th dose independent rect. 2 18
266 89.40 radiation 1.0 10 < th dose dependent rect. 20 6
272 89.41 wind 9.0 10 < th dose independent rect. 20 6
316 89.59 temperature 30.0 270 < th dose dependent rect. 21 1
321 89.63 radiation 30.0 4320 < th dose dependent rect. 21 6
326 89.68 radiation 20.0 270 < th dose dependent rect. 24 14
328 89.69 temperature 10.0 1440 > th dose independent rect. 21 6
331 89.69 temperature 30.0 1440 < th dose independent rect. 21 6
335 89.69 humidity 50.0 1440 > th dose independent rect. 21 6
341 89.69 atmosphere 995.0 1440 > th dose independent rect. 21 6
342 89.69 radiation 1.0 1440 < th dose independent rect. 21 6
362 89.69 temperature 10.0 1440 > th dose independent rect. 3 18
374 89.72 humidity 80.0 10 > th dose independent rect. 2 14
378 89.74 precipitation 0.1 10 < th dose independent rect. 20 6
379 89.74 precipitation 0.1 10 < th dose dependent rect. 20 6
385 89.78 wind 9.0 270 < th dose independent rect. 5 10
409 89.90 precipitation 0.1 30 < th dose independent rect. 2 18
412 89.90 precipitation 0.1 30 < th dose dependent rect. 2 18
420 89.94 temperature 10.0 270 > th dose independent rect. 5 10
421 89.94 atmosphere 1015.0 270 < th dose independent rect. 5 10
422 89.94 temperature 10.0 270 > th dose independent rect. 15 14
450 90.09 humidity 50.0 10 > th dose independent rect. 2 18
459 90.10 radiation 20.0 90 < th dose dependent rect. 21 23
470 90.16 wind 9.0 270 < th dose independent rect. 15 14
478 90.19 radiation 1.0 270 > th dose independent rect. 4 11
495 90.25 temperature 30.0 270 < th dose dependent rect. 17 16
508 90.33 wind 9.0 30 < th dose independent rect. 2 18
551 90.48 humidity 50.0 10 > th dose dependent rect. 20 6
563 90.56 temperature 20.0 90 > th dose dependent rect. 17 12
575 90.62 radiation 40.0 43200 < th dose dependent rect. 21 6
578 90.64 atmosphere 995.0 270 > th dose independent rect. 5 10
583 90.65 temperature 25.0 720 < th dose independent rect. 14 17
594 90.68 humidity 50.0 10 > th dose dependent rect. 2 10
611 90.74 radiation 30.0 10 < th dose dependent rect. 13 17
615 90.75 precipitation 0.1 270 < th dose independent rect. 15 14
617 90.75 radiation 40.0 270 < th dose independent rect. 24 17
618 90.75 precipitation 0.1 270 < th dose dependent rect. 15 14
668 90.86 radiation 20.0 30 < th dose dependent rect. 10 23
677 90.89 temperature 20.0 30 > th dose independent rect. 15 5
692 90.95 temperature 30.0 270 < th dose dependent sin 13 NA
722 91.01 radiation 10.0 30 < th dose dependent rect. 2 9
743 91.08 radiation 40.0 90 < th dose dependent rect. 13 16
751 91.10 radiation 20.0 10 < th dose dependent rect. 7 23
801 91.26 humidity 50.0 10 > th dose dependent rect. 24 20
809 91.29 radiation 1.0 270 < th dose dependent rect. 17 7
816 91.32 wind 9.0 10 < th dose dependent rect. 20 6
912 91.53 temperature 25.0 720 < th dose independent sin 14 NA
937 91.57 radiation 20.0 30 < th dose dependent no NA NA
947 91.58 radiation 20.0 30 < th dose dependent rect. 15 23
983 91.65 atmosphere 1015.0 270 < th dose independent rect. 23 20